| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1860 |
|---|
| Symbol | |
|---|
| ID | 5053184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1933894 |
|---|
| End bp | 1934361 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640472033 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001156636 |
|---|
| Protein GI | 145590039 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTA ACTCAAAACT ATTGATTGAT ATTCAGACGG CGAGCCCAGC TATTGAAGCA
GCCCTTAAGA AAATTGCCTC TTCAGCTTTG ATCAAAAAAT GGATCAAAGC TGCTACTCCT
CTTAGCGGTC TTCTCACACT ACGTTTTGTG AATTCGACCG AAGGGAAAAA ACTGAATGCA
GCCTTTCGAA AAAAACATTA CGCAACCAAT GTTTTGACAT TTCCCTATGA GCACTCAAAA
AGCGCTTTAA GCGCTGATAT TATTTTTTGC CTACCAGTGA TTCGGAAAGA GGCAAAAGAG
CAAGGTAAAA CTGTAAAAGC ACATTTAGCC CATTTGATCG TTCATGGATG TCTTCATGCT
CAAGGCTTTG ATCACGAACA TGAAAAAGAA ACAAAGAAGA TGGAAAAATT AGAGGTGGCA
CTTCTGAAAA AATTGGGTTT TACGGACCCC TACCTAACAA CACAATAA
|
|---|
| Protein sequence | MSSNSKLLID IQTASPAIEA ALKKIASSAL IKKWIKAATP LSGLLTLRFV NSTEGKKLNA
AFRKKHYATN VLTFPYEHSK SALSADIIFC LPVIRKEAKE QGKTVKAHLA HLIVHGCLHA
QGFDHEHEKE TKKMEKLEVA LLKKLGFTDP YLTTQ
|
|---|
| |