Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1827 |
Symbol | |
ID | 5052062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1907098 |
End bp | 1909383 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640472000 |
Product | TPR repeat-containing protein |
Protein accession | YP_001156604 |
Protein GI | 145590007 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0460239 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCCC AATTACAGAT GATGTTGCAA CAGGCTTTGC AATCCTTTCA AAATGGAAAT TATGAGAGGG CAGATTCCAT CTTAGTGAAA ATCATTAAAG CGGATTCAAA AAATTTACCA GCACTTCATG TCTTGGGACT CATTAAGGCA TCTCAAAAAA AATATCAAGA AGCCGCTGAC CTACTGAGCA AGGCCGCACG TTTAAATCCC AACGAAGCAT CTATTCAATA CAATTTAGCA AAATCTTTAG CAGATTGCGG CTCCTTCCGA GAGTCTATCC CTCATCATAA AAAAGCAGTT GAGTTGATGC CTAATAATCC AGAGGCATTG CTTAATTACG CAATTACATT GGGCGCTTTA GCAAGCTATG AAGAGGCTTT GAATGTTTTG GATAAAGCTA TTCTTATTCA GCCAAATTAT GCGGAGGCTT TTTTAAATCA CGGATTAATC CTTGCGGCAC TGAATCGCTT AGAGGATGCA AATATTTCAT TTGATTCAGC CATTAGATTA AATCCAAGCT CAAGTGAATC TTGTTTCAAC AAAGGCATTG TCTTGACGAA GCTTAACAAG TTAGACGAAG CTCTTAATGC CTATATAAGT GCAATTCACT TAAATCCAGA TTATCTTGAT GCTTGGTTAA ATCGAGGTGT CGTTCTTCAT GCTCTTAAGT GCTATGGTGA GGCTATTGAT GCTTTCAACA TGGTCATCAA ATTAAATCCA AATCATTTTC AGGCTTGGTT TAACAAGGGA GCTAGCTTAA AGGAGTTGCA ACGTTATGAA GAAGCCCTCA TTGCTTATGA CAACTCAATT AACTTAAATG TAGAGTATTC AGATGCATGG GTCAATAAGG CGGCAGCTCT CCATGAACTC AAACGGTTCA ACGAATCCAT AGAAGCCTAC CAGCATGCAC TAAAGCTCAA TCCCAAAATT GATTGGGTTG AAGGGGATCT CCTTCATACC AAGATGAAAG TATGTTTATG GGATGACTTT GACGAAAGTC TTGCAGATTT AATGAGTAAA GTGCGAACAG GCGAAAAAAG CATTACTCCT TTTCCATTAT TATCGCTAGT TGATGATGGG TTACTCCAGA AGCAGTGCTC AACTATTTAC GCTAATAGTA AGTTTCCGTT GAATGCCAAG CTAGGACCCC TAAATAAACT GCTACAAAAA GAGAGAATTC GTATTGGATA TTTTTCAGCT GATTTTAGAA ATCATGCAGT ATCAGCGCTG ACTGCTCAAC TGTTTGAACT GCACAATAAA CAGAAGTTTG AAATTATTGC CTTTTCATAT GGCCCTGATG ATCAAAGTCT AATGAGGAAT AGATTATCAA AAGCTTTTGA TCAATTTTTA GATATCGGTT CTCAGTCAGA TATGCAAATA GCCAAGCTTT CTAGAGATTT GGGTATTGAT ATCGCTATTG ATTTAGGTGG GTTTACCACT GACAGTCGGC CTGGTATTTT TTCCTATCGT GCCGCCCCTA TACAAGCTGG ATACATTGGT TACTTAGGGA CCATGGGCGC TAATTACATG GATTATCTGT TTGCAGATAA GACAATCATT CCTCATGAAG CTGAACAATA TTACTCAGAA AAAATCGTAT ATTTGCCAAG TTATCAGGTT AATGATACGA ACAGGAAAAT ATCAGATGAA ATTTTTTCCC GCGAGAGTCT AGGGCTACCA AAAGACGAAT TTGTATTTGC ATGCTTTAAC AATAATTACA AAATACTACC GGCAACTTTT AATAGCTGGA TGAATATATT GAAGGCCACC CCAAAAAGTG TTCTTTACTT ATATGCTGAT AATCCTTGGT CTAAAGATAA CTTGATGAAA GAGGCTGAAG CAAGGGGTGT AAAGGCGGAT AGGCTGATAT TTGGCGGCCG AATTGATGCT GATCAGTATC TAGCACGCTA TCGTGCTTGC GATTTATTTT TGGATACTGC CCCTTATAAC GCAGGGACAA CAGCCAGCGA TGCCTTGTGG GCGGGCCTTC CAGTTCTCAC ATTAATAGGA CAGTCTTTCC CCAGTCGTGT TGCTTCTAGC CTCTTAAATG CAGTTGGATT ACCAGAGCTT GTCACTAGTA GCGCCGCTGA ATATGAAATT AGGGCGATTG AGCTAGCTAT GAATCCTGAA ATGATGTCTG CAATAAAGCT GAAATTGGTA AATAATCAAC TTACTACTTT ATTGTTTGAT ACTCCTCGTT TTACTGAGAG CATTGAGGCG GTGTACACCA AAATGTATGG GGACTATCAA AGTAACGTAG GACCCAATCA CATTTCTCTC GGTTAG
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Protein sequence | MNPQLQMMLQ QALQSFQNGN YERADSILVK IIKADSKNLP ALHVLGLIKA SQKKYQEAAD LLSKAARLNP NEASIQYNLA KSLADCGSFR ESIPHHKKAV ELMPNNPEAL LNYAITLGAL ASYEEALNVL DKAILIQPNY AEAFLNHGLI LAALNRLEDA NISFDSAIRL NPSSSESCFN KGIVLTKLNK LDEALNAYIS AIHLNPDYLD AWLNRGVVLH ALKCYGEAID AFNMVIKLNP NHFQAWFNKG ASLKELQRYE EALIAYDNSI NLNVEYSDAW VNKAAALHEL KRFNESIEAY QHALKLNPKI DWVEGDLLHT KMKVCLWDDF DESLADLMSK VRTGEKSITP FPLLSLVDDG LLQKQCSTIY ANSKFPLNAK LGPLNKLLQK ERIRIGYFSA DFRNHAVSAL TAQLFELHNK QKFEIIAFSY GPDDQSLMRN RLSKAFDQFL DIGSQSDMQI AKLSRDLGID IAIDLGGFTT DSRPGIFSYR AAPIQAGYIG YLGTMGANYM DYLFADKTII PHEAEQYYSE KIVYLPSYQV NDTNRKISDE IFSRESLGLP KDEFVFACFN NNYKILPATF NSWMNILKAT PKSVLYLYAD NPWSKDNLMK EAEARGVKAD RLIFGGRIDA DQYLARYRAC DLFLDTAPYN AGTTASDALW AGLPVLTLIG QSFPSRVASS LLNAVGLPEL VTSSAAEYEI RAIELAMNPE MMSAIKLKLV NNQLTTLLFD TPRFTESIEA VYTKMYGDYQ SNVGPNHISL G
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