Gene Pnuc_1818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1818 
Symbol 
ID5052139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp1898876 
End bp1899799 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content44% 
IMG OID640471991 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_001156595 
Protein GI145589998 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.774485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGATGT CCGACCGCGA TGGTTTTATT TGGTCCGATG GGAAGCTAAT TCCTTGGCGC 
GAGGCCAATA TTCACGTTTT AACCCATAGT CTTCACTACG GAATGGGCGT TTTTGAGGGT 
ATTCGTGCCT ATAAAACCCC CCAAGGCACC GCTATTTTTC GACTGCCTGA GCACGTAAAA 
CGCCTATTTA ATGGCACCAA AATCTTCCAA ATGAACATGC CGTATAGCCC TGAAGAGATC 
ACTAAGGGCA TTATTGATAC GGTTAACAGC AATAAACTAG AAGCCTGCTA TATCCGCCCT 
ATCATCTTTA TTGGCTCGCA AAAGCTCGGA ATCTCCCCTA AGGGCAATAC CATTCATACG 
GCTATTGCGG CCTGGGAATG GGGTGCTTAT TTAGGCGAAG ATGGCCTGAA CAAGGGAATT 
CGCGTAAAAA CATCTTCTTT TACCCGCCAT TTCGTCAACT CTTCGCTGGT ACGGGCTAAG 
GCTTCGGGTT ACTACATTAA CTCGATTTTG GCTAATCAAG AAGTTACTGC CAATGGATAT 
GATGAAGCTT TGCTGCTAGA TACTGAAGGC TATGTATCTG AAGGCTCAGG CGAAAACTTA 
TTCATGGTGC GCAACGGTAT TGTTTACACA CCAGATTTAG CTTCTTGTTT AGATGGCATT 
ACACGCGACT CTGTAATGCA AATTGCAAAA GATTTGGGAT ACGAAGTACG CGAAAAACGT 
TTAACGCGTG ACGAAGTGTA TTCTGCTGAT GAAGCATTCT TTACAGGTAC AGCTGCTGAG 
GTAACTCCAA TTCGCGAATT AGATGACCGC TCCATTGGTG ATGGTGAGCG TGGCCCCATT 
ACAGAGAGAA TTCAAAAAAC TTATTTTGAT GCCGTCTACG GTAGAAACGA TCAGTACAAA 
AAGTGGCTTA CTTACGTTAA ATAA
 
Protein sequence
MSMSDRDGFI WSDGKLIPWR EANIHVLTHS LHYGMGVFEG IRAYKTPQGT AIFRLPEHVK 
RLFNGTKIFQ MNMPYSPEEI TKGIIDTVNS NKLEACYIRP IIFIGSQKLG ISPKGNTIHT 
AIAAWEWGAY LGEDGLNKGI RVKTSSFTRH FVNSSLVRAK ASGYYINSIL ANQEVTANGY 
DEALLLDTEG YVSEGSGENL FMVRNGIVYT PDLASCLDGI TRDSVMQIAK DLGYEVREKR 
LTRDEVYSAD EAFFTGTAAE VTPIRELDDR SIGDGERGPI TERIQKTYFD AVYGRNDQYK 
KWLTYVK