| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1813 |
|---|
| Symbol | |
|---|
| ID | 5053768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1893488 |
|---|
| End bp | 1893982 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471986 |
|---|
| Product | phosphoribosylaminoimidazole carboxylase, catalytic subunit |
|---|
| Protein accession | YP_001156590 |
|---|
| Protein GI | 145589993 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase |
|---|
| TIGRFAM ID | [TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000059548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA AGCCATTAGT CGGAATAGTG ATGGGTTCCA ATTCAGATTG GGACACCATG
CAGCATGCCG CTCAAATGCT AGAGCAATTT GGAATTGCTC ATGAAGCAAA AGTGCTTTCT
GCACATCGCA TGCCTGACGA TATGTTTGTA TATGCAGAGC AGGCACAGGC TAATGGTTTG
CAAGCCATCA TTGCTGGAGC TGGTGGCGCA GCGCATCTGC CGGGGATGTT AGCCTCTAAA
ACGATCGTGC CAGTGTACGG TGTTCCTGTC GCAAGCAAGT ACTTGCGAGG TGAAGATTCT
TTGTATTCCA TTGTGCAGAT GCCAAAAGGT ATTCCAGTTG CCACCTTTGC TATTGGTGAG
GCTGGCGCAG CGAATGCAGC ACTACATGTC ATTGCAGGTT TAGCTTTGCA TGATGCTGAA
TTGGCTAAAC GTCTTGAAGA ATTTCGTGTG AAGCAGTCAG ATGCAGCACG TTCTATGAAT
TTGCCGGGAT ATTAA
|
|---|
| Protein sequence | MSKKPLVGIV MGSNSDWDTM QHAAQMLEQF GIAHEAKVLS AHRMPDDMFV YAEQAQANGL
QAIIAGAGGA AHLPGMLASK TIVPVYGVPV ASKYLRGEDS LYSIVQMPKG IPVATFAIGE
AGAANAALHV IAGLALHDAE LAKRLEEFRV KQSDAARSMN LPGY
|
|---|
| |