| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1796 |
|---|
| Symbol | mnmA |
|---|
| ID | 5053080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1874877 |
|---|
| End bp | 1875989 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471969 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_001156573 |
|---|
| Protein GI | 145589976 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.334328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCGC TCAATTCTTC CTCAATACCA TCCTCCCAGA CCAAGAAAGT CGTTATTGGC
ATGTCTGGAG GGGTAGATTC GTCTGTTGCT GCTTGGATGC TCAAGGAACA GGGTTTTGAG
GTTATTGGCC TTTTTATGAA AAATTGGGAG GATGACGACA ACGATGAGTA CTGTTCAGCC
CGTCAGGACT GGCTCGATGT CGTTTCTGTG GCCGATATGA TCGGAATTGA TGTTGAGGCG
GTTAATTTTG CTGCTGAGTA TCGTGAACGC GTATTTGCCG ATTTCTTGTG TGAATACGCT
GCTGGTCGTA CACCTAACCC CGATGTTTTA TGTAACGCTG AGATTAAATT CAAAGCCTTC
TTGGATCACG CCATGAGTTT AGGTGCTGAT GCGATAGCTA CAGGTCACTA TGCACGCGTT
CGTCATGAGG GTGGCAGGGT GCAGTTATTA AAAGCGGTGG ATGCGAGCAA AGATCAAAGT
TACTTTTTAC ATCGTTTAAC GCAGCAGCAA TTGTCGAAGG TGATGTTTCC ACTTGGTGAA
ATTCCCAAAA CAGAGGTCAG AAAAATTGCG GAGCAGATTG GCTTGCACAA TGCAAAAAAG
AAAGACTCCA CTGGAATCTG TTTTATAGGT GAGCGACCTT TTAGAGAATT CTTAAACCGC
TATTTACCTC GAGTACCTGG CCCCATCAAA ACGCCAGAGG GTAAAACGGT TGGCGAGCAC
ATGGGTTTAG CTTTCTTTAC CTTAGGCCAA CGTAAAGGCA TTGGTTTAGG TGGTAGCCAA
GATGGTAATG GCGACGCTTG GTATGTGGCG CGCAAAGATA TGGCTAACAA CACATTGTAT
GTAGCACAGG GCCACGAGCA CCCGTGGTTA TTGGCCAACA AGCTTTCAGC TGTGGATGCA
AGCTGGGTAT CTGGTGCAGC ACCAGAGCCT GGAAGCTATT CCGCTAAGAC GCGCTATCGT
CAAACAGATT CTGCATGCAC TTACATAGCA GATATCGATA CAAATAATTT CAGCTTAAGT
TTTCCAGAAG CGCAGTGGGC GGTTACCCCT GGACAATCTG CCGTTTTATA TGACGGTGAT
ATTTGTTTGG GTGGGGGAAT TATTTCTACC TAA
|
|---|
| Protein sequence | MISLNSSSIP SSQTKKVVIG MSGGVDSSVA AWMLKEQGFE VIGLFMKNWE DDDNDEYCSA
RQDWLDVVSV ADMIGIDVEA VNFAAEYRER VFADFLCEYA AGRTPNPDVL CNAEIKFKAF
LDHAMSLGAD AIATGHYARV RHEGGRVQLL KAVDASKDQS YFLHRLTQQQ LSKVMFPLGE
IPKTEVRKIA EQIGLHNAKK KDSTGICFIG ERPFREFLNR YLPRVPGPIK TPEGKTVGEH
MGLAFFTLGQ RKGIGLGGSQ DGNGDAWYVA RKDMANNTLY VAQGHEHPWL LANKLSAVDA
SWVSGAAPEP GSYSAKTRYR QTDSACTYIA DIDTNNFSLS FPEAQWAVTP GQSAVLYDGD
ICLGGGIIST
|
|---|
| |