| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1791 |
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| Symbol | |
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| ID | 5052067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1868520 |
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| End bp | 1870379 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471964 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001156568 |
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| Protein GI | 145589971 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.779006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCT ATCCTCTCTG GAAATATTTA GTCATCGCCG TAGCTTTATT AATTGGCGGA
CTTTATTCAT TACCCAATTT CTATGGTGAG GCGCCTGCGG TTCAAGTATC GTCCGCCAAA
CCAACCATTA AGGTTGATTT GGCGACTCAG TCTCGTGTAG AAAAAATTCT GGCTGATGCA
AATATAAGTA CTACAGGGAT GTTTTTTGAA AGTGCTGGTA GCGTTGGAAC GATCAAGGCT
CGTTTTAACA ATACCGATAT TCAACTACGC GCCCGCGACC TCTTGCAGCA AAAGCTAAAT
ACAGATCAAA ACGATCCGAA CTACACCATT GCTTTAAACC TACTATCGAA CACACCAAGC
TGGTTGAATG CGATCAATGC ACTTCCTATG CCTTTGGGTC TTGACTTGCG TGGCGGAGTT
TATTTCCTGC TACAAGTCGA CATGAAGGGT GCAGTACAAA AGAAAGTGAC CGCCCTCTCA
ACTGATATTC GCAGTCAATT AAGAAGTAAC AATATTCGCC ATCAAGGCAT TGATCGTAGC
CCTGACTCTA TTACGATAAA TTTTGGCAGT ACAGACGAGG CTGAAGCAGC TCGTACCCTT
TTAAATACAT CCCAACCAGA TCTCATTTGG ATCATCAGAA ATGGTGCAGG TTCGGTCAAA
TTGCTCGGTG AATTTAAACC CAAAGCCTTA GCAGATATTC AAAATAATGC TGTCAAACAA
AATATCATCA CCCTCAATAA GCGGGTGAAT GAATTAGCCG TAAAAGAGCC CGTTATTCAA
CAACAAGGTG CCGAGCGTAT CGTAGTTCAG CTACCAGGGG TGCAAGATAC CGCGCGTGCC
AAGGATATTA TTGGTCGCAC TGCAACTCTG GAATCACGTC TTGCAGATCC ACTCGTCTCT
AGAATCAATG TAGGCGAAGC TGCGCCTCCC GGAACGGATA CCTTCCGTTT TGGTGAAAAC
CAAATGGGTG TTTTCAAAAA ATCCGTCATA TTTAGCGGTG ATAACATTAC TGACGCTAGT
GCTGGCTTCG ATCAGAACCA ACGCCCTGCA GTGAATATCT CCCTGGATGC TACCGGCGGT
CGCGTGATGC AAGAAGTCAC TCGCGAAAAC ATTGGCAAGC CAATGGGCAT GATCTTATTT
GAGAAAGGCA AAGGTGAAGT ACTCACTATT GCCACTATCC AAAGTGAATT CGGTGCTAAG
TTTCAAATTA CGGGTCAACC CACTACAGAG AGCGCTAATG ACCTCGCCTT GTTACTGCGC
GCAGGCTCAT TGGCAGCCCC AATGGAAATT ATTGAGGAGC GCACCATTGG ACCAAGCTTG
GGTGCTGAAA ATATTGAAAA AGGTTTTAAA TCTCTCTTAA TTGGATTTAC AGCAATTTCT
ATTTTCATGG TGGCGTACTA TTTATTGTTT GGCACCTTCT CAGTTATTGC ATTGGCAGTC
AACTTGTTGC TGCTGATTTC CATCCTCTCC ATGCTGCAAG CAACGCTTAC CTTGCCAGGT
ATTGCTGCGA TGGCATTGGC CTTAGGTATG GCGATTGACT CCAACGTATT AATTAACGAA
CGTATTCGTG AAGAACTCCG TAATGGCTCT TCACCTCAAA TGGCGATCTC CATTGGTTTT
GATAAAGCTT GGGCCACTAT TCTTGACTCA AACGTCACTA CATTGATTGC TGGTCTTGCA
TTGCTGGCTT TTGGTTCAGG CCCTATTAAA GGCTTTGCGA TAGTGCATTG CTTAGGTATT
TTGACTTCAA TGTTCTCAGC TGTCTTCTTC TCGCGTGGTC TCGTCAACCT TTGGTATGGC
AGACATAAGA AGATTTCCAA ACTCGCGATC GGCCAAGTTT GGCGCCCACA GGAGAAATAA
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| Protein sequence | MNRYPLWKYL VIAVALLIGG LYSLPNFYGE APAVQVSSAK PTIKVDLATQ SRVEKILADA
NISTTGMFFE SAGSVGTIKA RFNNTDIQLR ARDLLQQKLN TDQNDPNYTI ALNLLSNTPS
WLNAINALPM PLGLDLRGGV YFLLQVDMKG AVQKKVTALS TDIRSQLRSN NIRHQGIDRS
PDSITINFGS TDEAEAARTL LNTSQPDLIW IIRNGAGSVK LLGEFKPKAL ADIQNNAVKQ
NIITLNKRVN ELAVKEPVIQ QQGAERIVVQ LPGVQDTARA KDIIGRTATL ESRLADPLVS
RINVGEAAPP GTDTFRFGEN QMGVFKKSVI FSGDNITDAS AGFDQNQRPA VNISLDATGG
RVMQEVTREN IGKPMGMILF EKGKGEVLTI ATIQSEFGAK FQITGQPTTE SANDLALLLR
AGSLAAPMEI IEERTIGPSL GAENIEKGFK SLLIGFTAIS IFMVAYYLLF GTFSVIALAV
NLLLLISILS MLQATLTLPG IAAMALALGM AIDSNVLINE RIREELRNGS SPQMAISIGF
DKAWATILDS NVTTLIAGLA LLAFGSGPIK GFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
RHKKISKLAI GQVWRPQEK
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