| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1783 |
|---|
| Symbol | glcF |
|---|
| ID | 5052125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1859968 |
|---|
| End bp | 1861248 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471956 |
|---|
| Product | glycolate oxidase iron-sulfur subunit |
|---|
| Protein accession | YP_001156560 |
|---|
| Protein GI | 145589963 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACTC AACTCGCCCC TCAATTTGCT AATACCCCAG AAGGTATAGA AGCTGCTCGC
ATTTTGGGCA AATGTGTTCA CTGTGGTTTT TGTACGGCTA CTTGCCCTAC CTATCAACTA
CTAGGTGATG AGCTCGATGG TCCTCGGGGG CGCATTTACC TCATTAAACA AATAGCAGAA
GGGCAACAAC CCACTGAAAA AACGCGCCTT CATTTAGATC GCTGTCTTAC TTGCCGCAAC
TGCGAAAGTA CCTGCCCAAG CGGTGTGCAA TACGGAAACT TGATAGATAT AGGCCGCAAA
TGGGCCGAAG AAAATACGCC TCAGCGCCCA CTGATGCAAC GCCTCACTCG CTGGGCTCTC
AAAGAAGGTT TAACTAAACC CGCTTTATTT AATTCCGCCA TGGGAATAGG CCGCTTGGTA
CGCCCACTGA TGCCTAGTGG TATCCAGCGA AAAATTCCGT TGGCAAAAAA TAAGGTTTTA
GATCAAGCCA CCAATCCTTA CGCCAGACCG AGCGCACAAC ATGCTCGAAA AATGCTTCTC
TTAGAGGGAT GTGTCCAGCC TGGCATGCTG CCCAATATCA ACTCAGCTAC ATCACGGGTA
TTGGATGCAC TAAAGATTCA ATTAATTAGC GCGCCTAATG CCACTTGTTG TGGAGCATTA
CGCCATCACC TCAATGATCA AGTGGGTAGC TTAGATAATG CCAAGCAAAA TATTGATGCT
TGGTGGCCAC TGGTAGAGGC GGGCGCAGAA GCCATTGTGA TGACAGCCTC TGGCTGCGGT
GTGATGGTCA AAGATTATGG GCATTTATTA GTAAATGATC CTGTTTATGC AGCTAAAGCC
AAAAAGATTT CAGCATTAAC AAAAGATATT GCTGAAATTC TTCCAGAGCT ACAAAATGAA
TTGGTCGAGA TTTTGGGCTC TGATCAAAAA CCGGGTGTGG TCTATCACCC TCCTTGCACC
TTGCAGCACG GCCAACAAAT TCGTGGCAAG GTTGAAGGTT TGCTGGGAAG TATTGGTATT
GGAGTGCGTT TATGCAATGA CAGCCATCTG TGCTGCGGAT CGGCGGGAAC TTACTCCATA
ACGCAGCCAG AGCTATCAGA GCAACTGCGT AAGAATAAGT TAAACAATCT TCATATAGCC
TGCGAAGAGT CGGGTGCTGA GGTCGTTGTC TCAGGAAATA TTGGGTGTAT TACCCATCTT
CAACAAGAGG ACACCCCAGT CGTGCATTGG ATTGAAATCG TCGATCAATT GCTCAGCAGG
CAAACAACAA GCACTCAATG A
|
|---|
| Protein sequence | MQTQLAPQFA NTPEGIEAAR ILGKCVHCGF CTATCPTYQL LGDELDGPRG RIYLIKQIAE
GQQPTEKTRL HLDRCLTCRN CESTCPSGVQ YGNLIDIGRK WAEENTPQRP LMQRLTRWAL
KEGLTKPALF NSAMGIGRLV RPLMPSGIQR KIPLAKNKVL DQATNPYARP SAQHARKMLL
LEGCVQPGML PNINSATSRV LDALKIQLIS APNATCCGAL RHHLNDQVGS LDNAKQNIDA
WWPLVEAGAE AIVMTASGCG VMVKDYGHLL VNDPVYAAKA KKISALTKDI AEILPELQNE
LVEILGSDQK PGVVYHPPCT LQHGQQIRGK VEGLLGSIGI GVRLCNDSHL CCGSAGTYSI
TQPELSEQLR KNKLNNLHIA CEESGAEVVV SGNIGCITHL QQEDTPVVHW IEIVDQLLSR
QTTSTQ
|
|---|
| |