Gene Pnuc_1731 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1731 
Symbol 
ID5051948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1803504 
End bp1804439 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content46% 
IMG OID640471904 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_001156508 
Protein GI145589911 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.17452 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATA ACGCAGAAAT TTTGATGGCC CAACCCCGTG GTTTTTGTGC GGGCGTTGAT 
CGTGCTATCA ATATTGTGAA TGAAGCGCTG ACCCGTTTTG GCCCGCCAAT TTATGTACGT 
CATGAAATTG TGCACAACGC CTATGTTGTA AATGAGTTGC GTAACAAGGG CGCTGTATTT 
GTGGATGAGT TGGACGAAGT GCCCAAGGGT GGAATTGTGG TCTTTAGCGC GCATGGTGTT 
TCGCAAGAGG TTCGTGTAGA TGCCGAGGAG CGTGGCTTGC AGGTCTATGA CGCCACCTGC 
CCTTTGGTAA CCAAGGTACA TTTGGAAGTC ATCAAAATGT GTAAAGAGGG CTTTACAGTG 
TTGATGATTG GTCATGCAGG CCATCCCGAA GTTGAGGGGA CTATGGGCCA GGTAAAAGAA 
GGTGTTTTCT TGATTGAAAA AGTCAGCGAT GTGGATACGC TGACATTCCC AGCTAGTGAG 
AAGATAGCCT TTGTTACCCA GACTACGCTT TCAGTTGATG AGACAAAAGA AATTGTTGAA 
GCACTCACTA AAAAATTCCC CAATATCGTT CAGCCTCGCA AACAAGATAT TTGTTACGCA 
ACGCAAAATC GTCAAGATGC TGTGAAATTT ATGGCACCTC AAGTAGAGCT CGTTATTGTG 
GTTGGTAGTG CGGCGAGTTC GAACTCGAAT CGTTTGCGCG AATTATCGGA AAAATTAGGA 
GTGCCATCCT ACATGGTCGA TGCGCCTGAG CAATTAAAAC CGGAATGGTT TGTAGGTAAA 
AAACGGATTG GCCTTACTGC TGGGGCATCT GCTCCCGAAA GTTTGGCGCA ATCGATTGTG 
AATAAGATTC AAGAGTTTGG ACCAAGACAC GTACGTGCCT TGCCTGGAGT AGTGGAAGAC 
ATCACCTTCT CACTGCCAAA AAATTTAGTC GACTGA
 
Protein sequence
MSDNAEILMA QPRGFCAGVD RAINIVNEAL TRFGPPIYVR HEIVHNAYVV NELRNKGAVF 
VDELDEVPKG GIVVFSAHGV SQEVRVDAEE RGLQVYDATC PLVTKVHLEV IKMCKEGFTV 
LMIGHAGHPE VEGTMGQVKE GVFLIEKVSD VDTLTFPASE KIAFVTQTTL SVDETKEIVE 
ALTKKFPNIV QPRKQDICYA TQNRQDAVKF MAPQVELVIV VGSAASSNSN RLRELSEKLG 
VPSYMVDAPE QLKPEWFVGK KRIGLTAGAS APESLAQSIV NKIQEFGPRH VRALPGVVED 
ITFSLPKNLV D