| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1711 |
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| Symbol | |
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| ID | 5052268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1777339 |
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| End bp | 1780170 |
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| Gene Length | 2832 bp |
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| Protein Length | 943 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471884 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001156488 |
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| Protein GI | 145589891 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.338945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAAC ATAGACTCTT GTTGGTAGAC GGCTCTAGCT ACCTATATCG CGCCTTCCAC
GCTATGCCAG ACCTCAGAAA TGGGGCGGGC GAGCCTACTG GGGCTATATA TGGCATGGTC
AATATGATGC GCCGGGCTCG ATCTGAGCTC AAGGCTGACC ATATAGCCTG CGTCTTTGAT
GCCAAAGGGA AGACTTTTCG GGATGAAATG TACTCTGAAT ACAAGGCTCA CCGCTCCCCA
ATGCCTGAAG ACTTGGTCAA GCAAATTGAG CCGATTCATG CGATGGTCAA AGCAATGGGT
TGGCCTGTAC TCATGGTTTC GGGTGTAGAG GCGGATGACG TCATTGGAAC TTTAGCTTGC
CAAGCAACCG AAGCAGGTTG GGAAACCATC ATCTCTACTG GTGATAAAGA TTTAGCGCAA
TTGGTAAATC CTTCGGTCAC TCTCATCAAT ACGATGACTA ATGAGAAATT AGACATCGAA
GGCGTGATTG AAAAATTTGG CGTTCCACCA GAATTGATTG TCGATTATTT ATCCATCATT
GGGGACACTG TTGATAACGT TCCTGGCGTG CCAAAGGCTG GACCAAAAAC TGCTAATAAA
TGGTTAGCAG AATTTGGTAA CTTAGATAAC TTGATGGCCA ATGCGGATCA AGTTAAAGGC
GTTGTTGGTG AAAACTTGCG TGCTAGTTTG ACTTGGCTTC CTCAGGCGCG TCAATTAATT
ACTGTAAAAA CAGATTGTGA TTTATCACCC CATTTACCGG GCCTTGATGA TTTACATGAA
AAGTCAGAGG ATGCCGCTTT GTTGCGTGAA CTATTTGAGC GCTATGCATT TAAGACTTGG
TTGCGTGATG TCGAAAAGCA GCTCAATAAC CCATCTGATG GGGGTTCTGG GGCTGCAGTC
ACTTTTGATT TGGCTGGCTC ACCCATTACC AATTCCAGCT CTGAAACTGA TTCTGGAGAG
CTTAAAAGAG TCATCGCTAC AGCACCTACT AAAGGGCTAA CGCAGCAGAC TAGTGATTTG
CAAGATGCGA TTGAACGTCA CTATGAATGT GTAGTTGACG AAGAATCTCT TGAGCGTTGG
ATGAAGAAAA TTGAAGCTGC TGAGTTGACG GCAGTCGATA CCGAGACCAC GAGCTTAGAT
GCATTAGCAG CAGAATTAGT GGGGATCTCT TTATCAGTAA AGCCAGGTGA GGCTTGTTAC
ATTCCAGTGG CACATCGCAA TGGTGAAGCA CAGCTCAGTC GCGAGCTGGT TCTGAAACGC
ATGAAGTCTT GGTTAGAAAG TTCTAGCCAC CTCAAGGTCG GTCAAAACTT AAAATACGAC
ATCCATATAT TTGCAAATTA CGATATTCAT CTAGAGGGAA TTGCATTCGA CACTTTGCTT
GAATCCTATG TGTTGGAATC GCATTTACCT CACAATATGG ATAGTTTGGC AGAGCGCCAC
CTTGGTCTTA AAACGATTCG CTATGAAGAG GTATGCGGCA AAGGGGTTCA CCAAATTGGC
TTTGATCAGG TGGATCTGCA AATTGCTACC AACTATGCCG CCGAAGACGC AGACATCACT
TTGCGCTTGC ATTTAGAGCT CTGGCCTCAG ATTCAGGCGA GCCCAGGCCT GCTCTATGTC
TATGAAAAGA TTGAAATGCC AGCAATGTTG GTGCTGGGAA TCATGGAGCG CAACGGTATC
CGGATCGATT CCGCCTTATT GGCTAAGCAA GGCCAACAGG TGGGTAAACG CCTTTTAGAG
CTCGAGGGCG AAATTCACCG GCTGGCAGGC CAACCTTTTA ATATTCAGTC CCCAAAGCAA
ATCGCAGAAA TTTTGTTTGG ACAACTGGAA TTGCCTATAG TTAAAAAGAC ACCTTCGGGC
GCACCTTCTA CTGATGAAGA GGTTTTGCAG AAGTTGGCGG AAGACTATCC ATTGCCCGCC
CGCATTTTGG ACTATCGCAG TTTGGCCAAG TTGATGTCGA CCTATATTGA AAAACTTCCC
CGAATGGCTG ACCCTAAAAC GGGGCGAATT CACACTAACT TTTCTCAGGC AACTGCAGTT
ACTGGGCGCT TGGCATCAAG TGATCCTAAT TTGCAAAATA TTCCGGTGCG CACTGAAGAG
GGCCGTCGCA TTCGCGAGGC ATTTATTCCG GCTGACGGTT GCAAGTTATT GTCAGCCGAC
TACTCGCAGA TTGAGCTGCG CATCATGGCG CATATTGCCG AAGATGAAAA TTTATTAACT
GCCTTCAAAG AAGGCAAAGA CGTCCACCAG GCAACGGCTG CCGAGATATT CGGAATCCCC
TTGGATGATG TCAATTCTGA GCAACGTCGT TATGCCAAGG TGATTAACTT CGGTCTGATC
TATGGCATGA GTGCGTTTGG TTTAGCGGGT AACTTAGGTA TTGAGCGCGC AGCAGCGCAA
AACTATATCG CCAAGTACTT TGACCGATAT CCGGGCGTAG CTCAATACAT GGAACGGACG
CGTCTCGAGG CTAGAGAAAA CGGTTATGTA GAAACAGTCT TTGGGCGACG TCTTTGGTTG
CCCGAAATTA AGGGCTCTAA CGGCCCACGC CGTCAAGGTG CTGAGCGTGC CGCGATTAAT
GCACCGATGC AAGGAACTGC GGCTGATTTG ATTAAGCTGG CGATGATCGC AGTTGAGGAT
TGGTTGGAAA AAGAGCAGTT GAAAACCAAA ATGCTGCTTC AGGTTCATGA TGAATTGGTA
TTCGATGTGC CTTTAGATGA GATTGATCTG TTGCAGGCTA AATTACCTGA CCTCATGTGC
CATGTCGCGC AGTTAAAAGT GCCCTTGGTG GTTAGTATTG GTATTGGCGA TAATTGGGAA
GAGGCGCATT AA
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| Protein sequence | MTKHRLLLVD GSSYLYRAFH AMPDLRNGAG EPTGAIYGMV NMMRRARSEL KADHIACVFD
AKGKTFRDEM YSEYKAHRSP MPEDLVKQIE PIHAMVKAMG WPVLMVSGVE ADDVIGTLAC
QATEAGWETI ISTGDKDLAQ LVNPSVTLIN TMTNEKLDIE GVIEKFGVPP ELIVDYLSII
GDTVDNVPGV PKAGPKTANK WLAEFGNLDN LMANADQVKG VVGENLRASL TWLPQARQLI
TVKTDCDLSP HLPGLDDLHE KSEDAALLRE LFERYAFKTW LRDVEKQLNN PSDGGSGAAV
TFDLAGSPIT NSSSETDSGE LKRVIATAPT KGLTQQTSDL QDAIERHYEC VVDEESLERW
MKKIEAAELT AVDTETTSLD ALAAELVGIS LSVKPGEACY IPVAHRNGEA QLSRELVLKR
MKSWLESSSH LKVGQNLKYD IHIFANYDIH LEGIAFDTLL ESYVLESHLP HNMDSLAERH
LGLKTIRYEE VCGKGVHQIG FDQVDLQIAT NYAAEDADIT LRLHLELWPQ IQASPGLLYV
YEKIEMPAML VLGIMERNGI RIDSALLAKQ GQQVGKRLLE LEGEIHRLAG QPFNIQSPKQ
IAEILFGQLE LPIVKKTPSG APSTDEEVLQ KLAEDYPLPA RILDYRSLAK LMSTYIEKLP
RMADPKTGRI HTNFSQATAV TGRLASSDPN LQNIPVRTEE GRRIREAFIP ADGCKLLSAD
YSQIELRIMA HIAEDENLLT AFKEGKDVHQ ATAAEIFGIP LDDVNSEQRR YAKVINFGLI
YGMSAFGLAG NLGIERAAAQ NYIAKYFDRY PGVAQYMERT RLEARENGYV ETVFGRRLWL
PEIKGSNGPR RQGAERAAIN APMQGTAADL IKLAMIAVED WLEKEQLKTK MLLQVHDELV
FDVPLDEIDL LQAKLPDLMC HVAQLKVPLV VSIGIGDNWE EAH
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