| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1698 |
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| Symbol | |
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| ID | 5052901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1762904 |
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| End bp | 1764940 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471871 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001156475 |
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| Protein GI | 145589878 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTTGTAG AGGTTGTTGA GGAAGAAAAG ACACGTGGTC GCAAGGCTAA GGCTGATGCA
CCTGCTGAAA ATGCAGAGCC CGTTTTAACT GACCGTCAAA AAGCCCGTGA GCGTAAAGCA
AAAGAAAAGG CGCTCTTAAA AGAATTCGCA GCACAACAGT TGGGTACTGA AGAGCAACAA
GAGTTACGTC GTGCTCGCTT GAAGACTTTG ATCAAGATGG GTATGTCCAA GGGTTACTTG
ACCCATGGTG AGATGAATGA CGTAATGTCT GACGAGTTAT CTGATGCAGA TGCATTAGAA
ACTTTGATCA GCTTGCTCAA TGACATTGGC ATTACTGTTT ACGAACAAGC ACCTGATGCT
GAAACCTTAA TTCTGTCAGA CAATACAGAA GCTGCAGCTT CCGAAGAGGA GGCTGAAGAA
AAGGCTGAAG CAGCTCTCTC CACCGTGGAC TCAGAGTTTG GCCGCACAAC TGATCCAGTG
CGTATGTATA TGCGCGAGAT GGGTACGGTT GATTTGTTGA CTCGCGAAGG CGAGATCGTC
ATCGCAAAAA AGATTGAAGC TGGTCTAAAA GACATGGTAA TGGCATTAGC TGCATGCCCT
GTCACGATTG CAGAAATTAT GAGCAACGTA GACAAGATCG CCAGTGGTGA AATGGAAATC
GATCAATTTG TTGATGGTTT AGTTGATCCA AATGCTGAAG ATATTAAATT AGGGCCTGAA
GAACCTGAAG TTGACCCAGA TGCAGAAGAG GGTGACGAAG AGGGCGGAGA AGATGAAGGC
GGCGGTGGCG GCGGTGCTGC AACAGCTAAC GCAAAACAAT TAGAAGAACT CAAACAAATC
TCCTTAGAGA AGTTTGCAAT CGTTCGTGCG CAAGCTGAAA AGATGCGTCG TGCGTTTGAT
AAAGAGGGAT ATAACTGCCC TGCATACATT AAAGCGCAAG AAGCGATTCG TGCTGAGTTA
CTCGGCTTCC GCTTAACGGC AAAGAGTGTT GAAAAGTTAT GCGACACCAT GCGCTCCCAA
GTTGACCAAG TATGGAAGCT TGAGCGTGGC ATTGTGAACT TGCTCGTAGA CAAAGTCGGC
GTGAACCGTG GTGAAGTATT AAAAGACTTT CCTAAGATGT CCATGAATTT AACTTGGACT
GAAAAGTTAC TCAAAGAGAA CAAGCCTTAT AGCGCTCTCT TGCAACGTAA CGTTCCTGCA
ATTCAAGAAC TCCAGCAGAA ATTGATTGAT ATTCAGACTC GCGTGGTGAT TCCACTTCCA
GAGTTGAAAG AAGTAAATAA GCAGATGATC GCTGGCGAGA AGCGTGCCCG TGAAGCGAAG
CGTGAAATGA CTGTAGCCAA CTTACGTTTG GTGATCTCTA TTGCTAAGAA ATACACAAAC
CGTGGTTTGC AGTTCTTGGA TTTGATCCAA GAGGGCAATA TCGGCTTGAT GAAAGCGGTA
GATAAGTTTG AATACCGTCG TGGTTATAAG TTCTCAACCT ATGCAACTTG GTGGATTCGT
CAGGCAATTA CCCGTTCGAT TGCTGACCAA GCACGTACGA TTCGTATTCC TGTTCATATG
ATTGAGACAA TCAACAAAAT GAACCGTATC AGCCGTCAAA TCTTGCAGGA AACTGGTCAT
GAGCCAGATG CTGCAACTTT GGCGCTCAAG ATGGAGATTC CTGAAGACAA GATTCGTAAG
ATTATGAAGA TTGCTAAAGA GCCTATCTCT ATGGAGACTC CAATCGGTGA CGATGAAGAT
TCTCATTTAG GCGACTTCAT TGAAGACGGC AATACATTGG CTCCAGCAGA AGCTGCGTTA
CATGACTCTA TGCGCGATGT AGTGAAAGAC GTTCTCGATT CGTTAACACC ACGTGAAGCA
AAAGTATTGC GTATGCGCTT CGGTGTTGAG ATGAGCACTG ATCACACTCT CGAAGAAGTA
GGTAAGCAGT TCGACGTTAC TCGTGAGCGT ATTCGTCAGA TTGAAGCCAA GGCTCTGAGA
AAAATGCGTC ATCCAAGCCG TAGCGACAAA CTCAAGACCT TCCTCGAAGA GGATTGA
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| Protein sequence | MLVEVVEEEK TRGRKAKADA PAENAEPVLT DRQKARERKA KEKALLKEFA AQQLGTEEQQ
ELRRARLKTL IKMGMSKGYL THGEMNDVMS DELSDADALE TLISLLNDIG ITVYEQAPDA
ETLILSDNTE AAASEEEAEE KAEAALSTVD SEFGRTTDPV RMYMREMGTV DLLTREGEIV
IAKKIEAGLK DMVMALAACP VTIAEIMSNV DKIASGEMEI DQFVDGLVDP NAEDIKLGPE
EPEVDPDAEE GDEEGGEDEG GGGGGAATAN AKQLEELKQI SLEKFAIVRA QAEKMRRAFD
KEGYNCPAYI KAQEAIRAEL LGFRLTAKSV EKLCDTMRSQ VDQVWKLERG IVNLLVDKVG
VNRGEVLKDF PKMSMNLTWT EKLLKENKPY SALLQRNVPA IQELQQKLID IQTRVVIPLP
ELKEVNKQMI AGEKRAREAK REMTVANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKMNRI SRQILQETGH
EPDAATLALK MEIPEDKIRK IMKIAKEPIS METPIGDDED SHLGDFIEDG NTLAPAEAAL
HDSMRDVVKD VLDSLTPREA KVLRMRFGVE MSTDHTLEEV GKQFDVTRER IRQIEAKALR
KMRHPSRSDK LKTFLEED
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