| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1680 |
|---|
| Symbol | |
|---|
| ID | 5053382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1744815 |
|---|
| End bp | 1747943 |
|---|
| Gene Length | 3129 bp |
|---|
| Protein Length | 1042 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471853 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001156457 |
|---|
| Protein GI | 145589860 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACTA AATTAATTGA TGCAAGTTTG CATTTTCGCA AGCTCGTATT GGCAATGGCT
ATTGCATTAG TGCTCTTTGG TATTCATGCG TGGATGACGT TGCCAATTGA TGCCTTTCCT
GATATCTCGC CAACCCAAGT CAAAATTATT CTGAAGATTC CGGGGATGAC ACCTGAAGAG
GTTGAGCAGA GAGTAGTTCG CCCAATTGAA ATTGAAATGC TTAGCATTCC CAAGAAGCGG
ATTGTAAGAT CGGTATCTAA ATATGGCATT GCCGATATCA CGATTGATTT TGATGATGGC
ACTGATATTT ATTGGGCACG TCAGCAAATC TCAGAACGTT TAAATGCATT TACAAAAGAC
CTCCCACCCG GCGCAACTGG TGGGCTGGCA CCAATTACCA CTCCTTTAAG TGAAATTTAT
ATGTTCACTC TTGAGGGTGA GGGCTTTAGC TTAAGAGATA AACGCACCGT GTTGGACTGG
ACCATTCGAC CTGAGCTTCG AACCATTCCT GGTGTGGCTG AAGTCAACGT CTTGGGTGGG
GAGATTTTGA CTTACGAAGT AATTCCTGAC CCATCTCGAT TGGCTGCTCG TGGAATTACG
ATGGCAGATC TTCGTAAGGC GGTAATGACG AACAATAGTA ATGATGGGGC TGGGCGTATT
GATCAAGGTG AGGAGACGCT AGTAGTTCGT GTTGAGGGGG CCGTTAAAAA GCTGGACGAT
GTAAAAAAGA TCCAGATCCC AAAAACAAAC GGTGGCTCAG TCATGCTTGA CGAAGTTGCT
ACAGTTCACT TGGGGTCGGC CACTCGATAT GGCGCCGTGA CTAAAGATGG AAAAGGAGAG
GCAGTAGAAG GTTTGGTCTT GGGTTTACGC GGCGCTAATG CCCGCCTTCT GGTTGATTCG
GTTGAGCAAA AACTAGTTGA GATTGCTCCA AGATTGCCAA AAGGCATGAC CGTAAATACT
TTCTATAACC GCGGTGAATT AGTATCCCGC GCAGCAGGTA CCGTTACAAA GGCTTTACTT
GAAGCTACCG TGTTGGTTTG CATCACCTTA TATCTATTTT TAGGTGGGTA TCGTGCCGCT
CTGGTGGTTG CGGCTGTACT TCCGCTCTCA ATACTCTCTA CGTTCATATT AATGAAGGCA
TTTGGCCTAA CGGCTAACTT GATGAGCTTG GGTGGATTGG CAATTGCTAT CGGTATGTTG
GTAGATGCCG CAGTGGTGGT AGTTGAAAAT GTGGAAACAG CCTTTGCTGA TCCCAATACA
TCAAAAGCAT TAAGCAAGAC GGAAATCATT TCTATTGCTA CTCATGAGGT TGTTAAGCCT
ATGGTAGCTG GTGTATTTAT TATTGCTGTA GTTTTTCTTC CGTTGCTCAG TCTTGAAGGT
TTGGAGGGCA AACTATTTTC ACCGGTAGCG CTAACTATTG TGATGGCGCT CGCCTCATCC
TTATTAATTG CATTTACTGT CATTCCCGCC TTAGCTTCGT TTGTTTTAGA GCGCAAGGCT
GATGAAGAAA CAAAGTTTAT GCGCAAGATT TCAGAGAAAT ACGTTGAGTG GCGCAATCAG
GTATGGGGCA ATACCAAGTG GCTTTACAGG GCTTCTGGCA TTGGGTTGGG TGTGATGGTA
ATTCTTTATA TGATTGTGGG AAAAACCTTT ATGCCTACTC TAGATGAAGG AGACATCTTG
GTTCAGCTGC AAAAGCTCCC ATCAATATCC TTAAATGAGT CACTCATCAT TGATTCTCAG
GTGGAGCAGT TATTTTTAAA AGAAGTTCCT GAGATTAAAT CCATTGTTGC CAGAGCAGGT
TCAGATGATT TAGGTCTAGA TCCCATGGGC TTAAATGAAA CGGATATGTT TTTAGTGCTC
AAGCCTAAAA GTGAATGGTC TGGCAATAAG GATGATATTG CCAATAAGCT CAGGATTGCT
TTAGATAACT TTCCTGGATT AGTTTATGGT TTTACTCAAC CGATTGAAAT GCGTGTCTCC
GAGATGCTTA CGGGAACCCG CGGTGATGTG GCAATCAAAA TCTTTGGCAG TGATTTAGCT
GAAATCAATA AGGCGGCACA AGCTATAGCT GGCTCAGTTC GGAATGTTAA GGGTGCAGCT
GAGGTAATTG CACCTCGTGC TGAAGGAATG CAGTACTTAA GCCTAAAGAT TAACCGTACC
GTAGCGGGGC AAGCTGGATT CTCGATTGAG GACTTGCAGC AGCGATTACG CAATCAAATT
GAAGGTGAGA ACCTTGGGGT GGTATTAGAT GGGGTCATTA GAACACCATT GGTACTACGT
GGAAATGACT ATATACGTAC AAGCCCAGAA GCATTTGGCG ACTTAATGAT ATCCGCACCT
GATGGAAAAT CATGGCCACT AGCATCACTA GCTGAAATTA AGCAAGTAGA TGGGCCCATT
CGGATTGACC ATGAGCAATC AAGTCGCTTT GCTAGCATTC AAGTGTCTGT CGATGGCAGG
GATCTAGCAG GATTTGTGAA GGATGCTCAG GCGGCAGTGA TTGCGTTGAG CTTGCCTAAA
ACGATCAATG TGGTTTGGGG AGGGCAGTTT GAAAATCAAC AAAGGGCTGC TGCAAGGCTA
GCTATTGTGA TCCCGATTGC ATTGGGGTTA ATCTTTGCAA TACTGATGGT GACCTTTGGC
TCGGCAATAC AGGCTGGGAT CATATTCCTC AATATCCCTT TTGCACTAGT TGGTGGAGTT
GTTGCTTTAA CCATCACCGG TCAATATCTT TCCGTGCCAG CGTCGGTCGG ATTTATTGCA
TTACTTGGTA TTGCCGTCCT AAATGGCGTG GTGATGGTCA CTCACTTTAA CGAGCGCCTG
GTTAAGGGCG ACTCTATGTC TGATGTCATT CACTTTGGTA CTGGAAGGCG TTTACGCCCC
GTACTGATGA CGGCAGTTAT TACCGCCCTT GGAATGATTC CACTTCTTTT TGCTACGGGG
CCAGGTTCTG AAATTCAGCG TCCCTTAGCG ATTGTGGTGA TTGGTGGTTT GATCACGTCA
ACTTTATTAA CCTTGCTACT TTTACCAAAG CTCTATCAGC GCTTTGGGGC ATTAAAAAAT
TGGAGTGAGC TTAAAGAAGA AATCCACTTT GATCGTTTAA TTGAATCTAT TAAGAGGATC
AAAAAATGA
|
|---|
| Protein sequence | MFTKLIDASL HFRKLVLAMA IALVLFGIHA WMTLPIDAFP DISPTQVKII LKIPGMTPEE
VEQRVVRPIE IEMLSIPKKR IVRSVSKYGI ADITIDFDDG TDIYWARQQI SERLNAFTKD
LPPGATGGLA PITTPLSEIY MFTLEGEGFS LRDKRTVLDW TIRPELRTIP GVAEVNVLGG
EILTYEVIPD PSRLAARGIT MADLRKAVMT NNSNDGAGRI DQGEETLVVR VEGAVKKLDD
VKKIQIPKTN GGSVMLDEVA TVHLGSATRY GAVTKDGKGE AVEGLVLGLR GANARLLVDS
VEQKLVEIAP RLPKGMTVNT FYNRGELVSR AAGTVTKALL EATVLVCITL YLFLGGYRAA
LVVAAVLPLS ILSTFILMKA FGLTANLMSL GGLAIAIGML VDAAVVVVEN VETAFADPNT
SKALSKTEII SIATHEVVKP MVAGVFIIAV VFLPLLSLEG LEGKLFSPVA LTIVMALASS
LLIAFTVIPA LASFVLERKA DEETKFMRKI SEKYVEWRNQ VWGNTKWLYR ASGIGLGVMV
ILYMIVGKTF MPTLDEGDIL VQLQKLPSIS LNESLIIDSQ VEQLFLKEVP EIKSIVARAG
SDDLGLDPMG LNETDMFLVL KPKSEWSGNK DDIANKLRIA LDNFPGLVYG FTQPIEMRVS
EMLTGTRGDV AIKIFGSDLA EINKAAQAIA GSVRNVKGAA EVIAPRAEGM QYLSLKINRT
VAGQAGFSIE DLQQRLRNQI EGENLGVVLD GVIRTPLVLR GNDYIRTSPE AFGDLMISAP
DGKSWPLASL AEIKQVDGPI RIDHEQSSRF ASIQVSVDGR DLAGFVKDAQ AAVIALSLPK
TINVVWGGQF ENQQRAAARL AIVIPIALGL IFAILMVTFG SAIQAGIIFL NIPFALVGGV
VALTITGQYL SVPASVGFIA LLGIAVLNGV VMVTHFNERL VKGDSMSDVI HFGTGRRLRP
VLMTAVITAL GMIPLLFATG PGSEIQRPLA IVVIGGLITS TLLTLLLLPK LYQRFGALKN
WSELKEEIHF DRLIESIKRI KK
|
|---|
| |