Gene Pnuc_1562 details

Gene Information

• Locus tag: Pnuc_1562
• Symbol: prpE
• ID: 5053140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 1635132
• End bp: 1637009
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640471735
• Product: propionyl-CoA synthetase
• Protein accession: YP_001156340
• Protein GI: 145589743
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02188] acetate--CoA ligase; [TIGR02316] propionate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATATA AAGAATTTCA TCAGTCCTCT ATTGAAAATC CAGAAAAATT TTGGGATGAG 
CAGGCCAAAC TAATCCACTG GGAAAAGCCC TATACAGAAG TGCTGGATTA TTCCAACCCC 
CCATTTGCAA AATGGTTTAA GGGTGGCCTA ACCAATCTTT GCTACAACGC GATTGATCGG 
CATCTCGCGA CTCGTGGCGA CCAAATCGCC CTCATTGTGG TTTCTACAGA AACAGACCAA 
GAAAAAACGT ATACCTATAA AGAGTTGTAC ACGGAAGTGA ATCGGATGGC AGCCATTCTG 
AAAGCGAATG GGGTTAACAA AGGCGATCGA GTACTGGTTT ATATGCCAAT GATTGCTGAG 
GCGGCATTTG CAATGCTGGC CTGTGCTCGA TTAGGAGCAA TTCATTCAGT TGTTTTTGGG 
GGTTTTGCCT CACACAGCCT GGCAACCCGT ATTGATGATG CTGAACCAGT GGTAATTATT 
ACTGCTGAGG CAGGTATGCG CGCAGGAAAA ACGGTTCCCT ACAAACCATT GCTAGATGAG 
GCCATTGAGC TTGCTAAATA CAAGCCTAAA AAAGTATTAA TTGTGAATCG TGGCTTACTA 
GCTTTTACAA CAGTCACAGG AAGAGATCTG GATTACGCTA CTGAACATCA AAAACATCTT 
GATGACAAAG TGCCTGTTGA GTGGGTAGAT GCAACTCACC CCTCTTACAT TCTGTATACC 
TCAGGAACTA CCGGAAAACC CAAAGGCATT CAACGGGACA CTGGTGGACA TGCAGTAGCC 
CTTGCTGCCT CAATGAAATA CATCTTTTGC GGGCAACCAG GAGAGACGAT GTTCACTGCC 
TCAGATGTGG GCTGGGCAGT AGGCCATAGC TACACTATCT ACGGACCCCT CATTAATGGC 
ATGTCTTCAA TCATGTATGA AGGCACCCCA TTACGTCCTG ACCCAGGTAT TTGGTGGCAG 
CTTGTTGAAA AATACAAAGT TACTGTGATG TTTACTGCAC CAACAGCAAT TCGGGTTCTT 
AAAAAACAAG ATCCCGCTTA CCTCAGTAAA TATGATTTGT CTTCATTGCG CTTATTGTTC 
CTGGCTGGGG AACCATTAGA TGAACCCACT GCAACATGGA TTCATGAGGG CATCAAAAAA 
CCTGTTGTTG ACAACTATTG GCAAACTGAA ACCGGATGGC CAATGATGGC AATTCAAAGA 
GGCGTAGAAG TCATGCCTCA TAAATTTGGC TCTCCTGGTG TACCCGTGTT TGGATATAAC 
CTCAAACTAT TAGATGAAAG TACTGGCGAA GAGTTGGGTC CAGATAAGAA AGGTGTTGTT 
GTAATCGAAG GGCCGCTTCC TCCGGGATGC ATGCAAACTG TTTGGGGTGA TGACCAGCGT 
TTCGTAAGTA CTTATTGGGA AACCGTTCCA GGCAAGATGA CCTATTCCAC TTTTGACTGG 
GGCATCAAAG ACAAGGACGG CTATTTCTTT ATTCTTGGTA GAACAGATGA TGTAATTAAC 
GTTGCAGGTC ATCGACTCGG TACACGTGAA ATCGAAGAGT GCCTATCTAG TCACACCAAT 
GTTGCTGAGG TAGCGGTAGT TGGTATTGAG GATCAACTCA AAGGTCAGGT ACCTATTGGC 
TTTGTGGTCA CAAAAGATGG TTCAAACGCA CCAGAAATTG AATCTGAATT GATGAAAATT 
GTGGACGCCA AATTGGGAGC CTTAGCGCGC CCAGCAAAAA TTTATCTCGT GAATCTTTTG 
CCTAAAACAC GCTCGGGAAA GATTGTCCGA CGTGCACTTC AAGCTATCTC TGAAGGCAGA 
GAATTAGGCG ACATTAGTAC CATCGAAGAT AAAACTGTAT TAGATCAAAT CCAAGAAGCA 
ATTAATCAAA GAAGGTAA 

 

Protein sequence

MSYKEFHQSS IENPEKFWDE QAKLIHWEKP YTEVLDYSNP PFAKWFKGGL TNLCYNAIDR 
HLATRGDQIA LIVVSTETDQ EKTYTYKELY TEVNRMAAIL KANGVNKGDR VLVYMPMIAE 
AAFAMLACAR LGAIHSVVFG GFASHSLATR IDDAEPVVII TAEAGMRAGK TVPYKPLLDE 
AIELAKYKPK KVLIVNRGLL AFTTVTGRDL DYATEHQKHL DDKVPVEWVD ATHPSYILYT 
SGTTGKPKGI QRDTGGHAVA LAASMKYIFC GQPGETMFTA SDVGWAVGHS YTIYGPLING 
MSSIMYEGTP LRPDPGIWWQ LVEKYKVTVM FTAPTAIRVL KKQDPAYLSK YDLSSLRLLF 
LAGEPLDEPT ATWIHEGIKK PVVDNYWQTE TGWPMMAIQR GVEVMPHKFG SPGVPVFGYN 
LKLLDESTGE ELGPDKKGVV VIEGPLPPGC MQTVWGDDQR FVSTYWETVP GKMTYSTFDW 
GIKDKDGYFF ILGRTDDVIN VAGHRLGTRE IEECLSSHTN VAEVAVVGIE DQLKGQVPIG 
FVVTKDGSNA PEIESELMKI VDAKLGALAR PAKIYLVNLL PKTRSGKIVR RALQAISEGR 
ELGDISTIED KTVLDQIQEA INQRR