Gene Pnuc_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1552 
Symbol 
ID5052572 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1623838 
End bp1625256 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content44% 
IMG OID640471725 
Productdehydrogenase catalytic domain-containing protein 
Protein accessionYP_001156330 
Protein GI145589733 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00384703 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTATAA AAGCGTTTTA TAGCCAATAT TTAGCATCCT ATTTGGCAAA AAATACTCCA 
AAATTAGCCT CATATTTATT ACTATTAGGC ATTGGAGCGG CTTTGGCGAT TGAGATTCTT
GTTCCCGATA TAGGGGACTA TCAAAACATC CCTGTGATTG AGGTATTGGT ACAAGTGGGT
GATCAGATTG AGAAAGAGCA ATCTATTTTG ACCTTGGAGT CCGATAAGGC AACTATGGAT
GTGCCGTCTT CTCATTCGGG AATCGTGAAA GAAATTAAGG TCAAGATTGG CGATCTACTT
TCTCAAGGGA AGTCAGTCAT CGTCCTGGAG GATGGCCTAC CATCTGATGC TACAAGCAAT
GAATCTGAGC ATATCTCGCA AAGCACTATT GAAGTCATCA ATAAAGCAAA GACCAATGAA
CTCTTGACTA TCGATGGGTC TCGAGCAGAG TCCTCTAAAG AAATCATTTC AAGTTTGGTC
AGCAATGACC CTAATGATGA AAGTCGAGAA GCATGGGCAA GTCCTTCCGC GAGAAAGTTC
GCCCGTGAAT TTGGTGTGGA TCTACAAAAA GTAAAAGGCA GTGGAATAAA AGGCCGGGTG
ACGAAAGAAG ATATTCAGCT ATTGATTAAA AGTACGATGT CCACTATTGG GGCCAATACT
GAAAGGGCTT CCGCGGGAAT TTCAGGAATG GATATCTTGC CTTGGCCAAA GGTGGACTTC
AGCAAATTTG GCTCCATAGA GAGGGTCGCA CGCTCGCGGA TTCAGAAAGT ATCGGCAGCC
AATCTTGCTC GCAATTGGCT CATGATTCCA GCGGTAACTT ATCACGATGA TGCGGATATT
ACTGATCTGG AGAAATTCCG CAGCGACCTC AATAAAGAGG GTAAAAAAGA TGCGGTGAAG
ATTACCCTGC TGGCTTTCCT AATTAAGGCA GCTGTAGCTG CCTTAAAGAA ATACCCTACT
TTCAATGCTT CACTTGATGG TGAGGAATTG ATCCTTAAAA AATATTGCCA TATTGGCTTT
GCAGTCGATA CCAATATTGG ATTGGTGGTA CCGGTGATTC GCAATGCGGA TCAAAAAGGG
ATTTTAGAGA TTGCTAAAGA AACCGCAGAA CTTGCCCAAT TAGCGCGTGA CGGAAAGCTT
AAGCCAGAGC AAATGCAGGG AGCTAGTTTT ACGATCTCTT CCTTAGGGGG TATAGGGGGA
ACTTACTGTG CTCCCATCAT TAACGCCCCA GAAGTGGCGA TATTAGCCGT CAATAAGTCC
GCCATAAAGC CCGTCTGGGA TGGTGCCGAG TTTATTCCTC GCTTGATCTG TCCGTTATCC
ATGACTGCTG ATCATCGTGT AATTGATGGC GCTTTAGCTA CCCACTTCAC TACTTATTTA
GCTCAGCTTT TAGCTGATTT TCGCAAAGTG CTCTTGTGA
 
Protein sequence
MLIKAFYSQY LASYLAKNTP KLASYLLLLG IGAALAIEIL VPDIGDYQNI PVIEVLVQVG 
DQIEKEQSIL TLESDKATMD VPSSHSGIVK EIKVKIGDLL SQGKSVIVLE DGLPSDATSN
ESEHISQSTI EVINKAKTNE LLTIDGSRAE SSKEIISSLV SNDPNDESRE AWASPSARKF
AREFGVDLQK VKGSGIKGRV TKEDIQLLIK STMSTIGANT ERASAGISGM DILPWPKVDF
SKFGSIERVA RSRIQKVSAA NLARNWLMIP AVTYHDDADI TDLEKFRSDL NKEGKKDAVK
ITLLAFLIKA AVAALKKYPT FNASLDGEEL ILKKYCHIGF AVDTNIGLVV PVIRNADQKG
ILEIAKETAE LAQLARDGKL KPEQMQGASF TISSLGGIGG TYCAPIINAP EVAILAVNKS
AIKPVWDGAE FIPRLICPLS MTADHRVIDG ALATHFTTYL AQLLADFRKV LL