| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1551 |
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| Symbol | |
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| ID | 5052578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1621171 |
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| End bp | 1623810 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471724 |
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| Product | 2-oxoacid dehydrogenase subunit E1 |
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| Protein accession | YP_001156329 |
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| Protein GI | 145589732 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
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| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00110575 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCC CTGACATAAA AAAATACTTT AATTCGGAAC AACTTGATAC GGATCCTACT
GAAACTGCGG AGTGGACTGA GGCTTTTCAG GATTTGCTGG CTAATAGTGA TAGTGAGCGC
GCCAAATTTA TATTAAATAA CCTAGTTAAG CTTGCCAATA AAAATCAAAT TAATTGGGTT
CCTGATTTAG TAACGCCTTA TATCAACTCC ATTCCGGTTG ATGAGCAACC TGAATTTCCT
GGAGACTTAG CTACTGAAGA AAAGCTAGCA TCTCTCATGC GATGGAATGC GCTTGCGATG
GTGGCAAAAG CAAATGAAGC CTATGGAGAA CTTGGCGGTC ATATTGCTAG CTATGCAAGC
GCTGCCGACT TATTTGAAGT TGGCTTTAAC CACTTTTTCC GTGCTAGAAC AGAGGGCGGT
GATGTTAAAG ATCGTGGCGA TCTAGTGTTT TTTCAGCCTC ATAGTGCGCC AGGAGTTTAT
GCACGCGCTT ATCTCGAGGG CAGGTTAACT GAAAATGATC TTGCGCACTA TCGACGTGAG
ATTACTGCGC CTGATTCAGG CGCGCGCGGT TTATCTAGTT ACCCACACCC ATGGCTCATG
CCTGACTTTT GGCAGTTTCC AACGGGTTCA ATGGGTATAG GTCCAATTAG CTCGATTTAC
CATGCGCGTT TTATGCGCTA TCTGACTGAT CGTCAATTAT TGGATTGCAC TACTCGTAAG
GTATGGGGAG TATTCGGCGA CGGTGAGATG GACGAGCCTG AGAGTATGAG CGCTCTTACA
TTGGCTTCCC GCGAAAAGTT GGATAACTTG GTTTGGGTGG TGAACTGCAA CTTACAACGC
TTAGACGGAC CAGTTCGAGG TAACGGCCGA ATTATTGATG AGCTTGAAAA GTTATTCCGT
GGCTCGGGTT GGAATGTTAT TAAATTGGTC TGGGGTAGTG ACTGGGATGG ACTCTTTGCA
AGAGATACTA CTGGCGCATT GGTGAAAGCT TTTGCTCAGA CAGTTGATGG GCAGATGCAA
ACTTTTGCTG CAAAAGATGG GAGTTTTAAT CGCAAAAACT TTTTCGGTCA AAACGAGGAA
TTGGCACGCC TAGCTCAAGG TATGACAGAT GAGCAGATTG ATAGATTAAA ACGGGGTGGT
CATGATTTAG TCAAAATCTA TGCTGCATAT CATGCGGCGG CTAATCACGT AGGACAACCG
ACAGTTATTT TGGCGCACAC CAAAAAAGGA TACGGTATGG GGAATGCAGG TCAAGGCAAG
ATGACCACTC ATAGTCAGAA AAAGTTAGAT GACGAAGCCT TAATTGAATA TCGCAATCGC
TTTAATTTGC CTCTGACTGA CGAGCAAGCA ACAAGCCTGA CATTCTTTAG ACCGGATGAG
GACAGCGAGG AGCTTCAATA TTTAAAACAA CAACGCAATC AGTTGGGCGG ACAGCTTCCT
AAACGCTACT CTGATTGTGA GAAGTTAAAT GTTCCTGATA TTGAGTCTTA CGCCGCATTT
GCACTCAAGG CTGACGATAA AGAAATGTCC ACCACCATGG CTTTTGTTCG CATGCTGGGT
AATTTACTCA AAGATAAGAC TTTGGGACCA AGAGTAGTGC CGATTGTTGC TGATGAAGCA
CGTACATTTG GTATGGCCAA TTTATTTAAA CAGGTTGGCA TCTACTCCAG TGTTGGACAG
CGCTATGAGC CAGAGGATAT CGGCTCAGTC TTGAGTTATC GCGAAGCATT AGATGGTCAA
ATATTGGAAG AGGGCATTAG TGAGGCTGGT GCAATCGCCA GTTGGACTGC GGCTGCTACG
AGTTATAGCG TTCACGGCAT TGCGATGCTA CCTTTTTATA TTTATTACTC GATGTTTGGG
TTTCAGCGAA TTGGCGATGC CATTTGGGCT GCAGCCGATC AGCGGGCAAG AGGGTTCTTA
TTGGGAGCTA CTTCAGGTAG GACTACTTTA GGTGGGGAAG GATTGCAGCA TCAGGATGGT
AGTAGCCAGC TAGTTGCCGC TACCATTCCT AATTGCAAAG CATATGACCC TGCATTTGCT
GGCGAGCTAG CAGTGATAGT TGAACAAGGT ATGCGAGATA TGTTGGTAGA GCAAAAAGAC
TTGTTCTACT ACATCACCTT AATGAATGAA AACTATGCTC AACCAGATTT ACCTGCGGAT
GCTGCTGAAG GAGTTATTCG TGGAGCATAC CGATTTAAAA CTCTCATAGC TGAGAAGAGT
GCAAAAGAGA ATTGGGTGAC TTTATTAGGT TCGGGCGCCA TCATGACTGA AGTTTTAAAG
TCTGCCGATT CTTTGGTAAA GCAGGGAATT AATGTTGATA TTTATAGCGT AACTAGTTGG
AGTGAACTGT CTAGAGATGG TAAATCTAAG GAGCAGGCAG CACACAGTCA AGGTGCCAAA
GCAGAGCCAT CCTATGTTCA TCAGCTTTTG ATGGAAAGTC ATGGCCCTAT CATCGCAGCT
ACTGACTATG TACATGCTGT TCCAGAAAGT ATTCGTGCAT ACATTCCTGA AGGTAGGTCT
TATATCACTT TAGGTACCGA TGGCTTTGGA AGAAGCGATA CTCGTGCTGC ATTACGCGAT
TATTTTGGTG TTGATGCAGA GAGCATTAGC AGGGTATCTA CTCAAGCCTT AAAGCAATAA
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| Protein sequence | MNAPDIKKYF NSEQLDTDPT ETAEWTEAFQ DLLANSDSER AKFILNNLVK LANKNQINWV
PDLVTPYINS IPVDEQPEFP GDLATEEKLA SLMRWNALAM VAKANEAYGE LGGHIASYAS
AADLFEVGFN HFFRARTEGG DVKDRGDLVF FQPHSAPGVY ARAYLEGRLT ENDLAHYRRE
ITAPDSGARG LSSYPHPWLM PDFWQFPTGS MGIGPISSIY HARFMRYLTD RQLLDCTTRK
VWGVFGDGEM DEPESMSALT LASREKLDNL VWVVNCNLQR LDGPVRGNGR IIDELEKLFR
GSGWNVIKLV WGSDWDGLFA RDTTGALVKA FAQTVDGQMQ TFAAKDGSFN RKNFFGQNEE
LARLAQGMTD EQIDRLKRGG HDLVKIYAAY HAAANHVGQP TVILAHTKKG YGMGNAGQGK
MTTHSQKKLD DEALIEYRNR FNLPLTDEQA TSLTFFRPDE DSEELQYLKQ QRNQLGGQLP
KRYSDCEKLN VPDIESYAAF ALKADDKEMS TTMAFVRMLG NLLKDKTLGP RVVPIVADEA
RTFGMANLFK QVGIYSSVGQ RYEPEDIGSV LSYREALDGQ ILEEGISEAG AIASWTAAAT
SYSVHGIAML PFYIYYSMFG FQRIGDAIWA AADQRARGFL LGATSGRTTL GGEGLQHQDG
SSQLVAATIP NCKAYDPAFA GELAVIVEQG MRDMLVEQKD LFYYITLMNE NYAQPDLPAD
AAEGVIRGAY RFKTLIAEKS AKENWVTLLG SGAIMTEVLK SADSLVKQGI NVDIYSVTSW
SELSRDGKSK EQAAHSQGAK AEPSYVHQLL MESHGPIIAA TDYVHAVPES IRAYIPEGRS
YITLGTDGFG RSDTRAALRD YFGVDAESIS RVSTQALKQ
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