Gene Pnuc_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1544 
Symbol 
ID5053412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1614035 
End bp1614700 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content44% 
IMG OID640471717 
ProductGntR family transcriptional regulator 
Protein accessionYP_001156322 
Protein GI145589725 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.403257 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTCTC AACTAAACAA ACTTCCCGCT AGAACAGACT ATGTCGAGGC GGTGTACAAG 
GCCTTACTTG ACGCGATTAG TGACGGCTCA CTACCGCCAG GGACTCGCAT TACTCAGGAA
GAAATTGCTG AGCAAATGAA TGTCTCGCGC TTGCCCGTTC TGCAAGCACT CAGAATGCTA
AAAAATGATG GTTTTGTGGA AGATGCTCCC GGAAGGGGCT TGCAAGTTAC AGCATTAAAT
ATTGAATGGA TTGATAAGTT ATATGAAATA CGTGGCGCAC TCGATTCTCT AGCTGCAAAA
CTAGCAGCCC AAAAGAAATG CATTATTGAC CCTGCCCTAA TTAAGAACGG GCGCGCCATT
TCAGAGAAAG GCAATGTTAA GGCCTTAATT GATGCTGACA TGGCCTTTCA TAGCGCTATT
TATGAAGCTT CTGAAAATCC ACTAATTGCA AAAAGCGCGC ACTTACACTG GGTTCATCTA
CGCAGAGTCA TGGGGGCTGT ATTGCAATCA TCACAACGAT CAGCTATTTG GGATGAACAC
CAAGCAATTG CTGATGCCAT TAAAAATGGG GATGAAAAAA AAGCTGCAGA ACTTTCAGAA
TTGCATGCAA TGCGAGCTAG AAAAAATCTG ATTCATCAAC TGAGCGAAGT TCTAACGAAC
CATTAA
 
Protein sequence
MLSQLNKLPA RTDYVEAVYK ALLDAISDGS LPPGTRITQE EIAEQMNVSR LPVLQALRML 
KNDGFVEDAP GRGLQVTALN IEWIDKLYEI RGALDSLAAK LAAQKKCIID PALIKNGRAI
SEKGNVKALI DADMAFHSAI YEASENPLIA KSAHLHWVHL RRVMGAVLQS SQRSAIWDEH
QAIADAIKNG DEKKAAELSE LHAMRARKNL IHQLSEVLTN H