| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1529 |
|---|
| Symbol | |
|---|
| ID | 5053494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1598986 |
|---|
| End bp | 1599885 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471702 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001156307 |
|---|
| Protein GI | 145589710 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.188503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGGCCT ATTACTCAGA TCACTTTGTA TTACCCCTGC CAACAGGACA TCGATTTCCA
ATGGAGAAAT ATTCACGCCT GCGAGATTTA GTGGGCACCC TGTCTTCAGT AGAGACAATC
GAGGCGCCCG CCGCTAGCGA TACTCAAATT CTGTACTGCC ATGATCCCCA ATACCTCATT
AAAGTGATTG AGGGAAAACT CAGCCCACAA GAACAAAAAG AAATTGGCTT TCCTTGGAGC
GTAAAAATGG TTGAGCGCTC ACGACGCTCG GCTGGAGCTA CGGTAGCCGC TGCCAAGACT
GCTTTAGAGG AAGGCATTGC CGCCAACCTG GCAGGCGGAA CCCATCACGC CTATCGGGCA
ATAGGAAGTG GATTTTGTGT ATTTAATGAC TCAGCAATCG CTGCGCGGAC ACTCCAAAAA
GAGATCAGCC CCCATTTAAA AATTGCTGTA ATTGACTTAG ATGTTCATCA AGGCAATGGC
ACTGCCGCCA TCTTACAAAA CGACCCCTCT ATCTTTACCT TATCTATTCA TGGGGAAAAC
AACTTTCCTT TTAAAAAAGA GCAAAGTGAT TTAGATCTAG GGCTGCCGGA TGGCTGTGAG
GACAAGCTGT ATTTAAATGC TTTATGCAAA GCTCTTGAGG AGCTTGAGTC CCGCTTTAAG
GCAGATTGCA TTATTTACTT AGCAGGCGCA GATCCTCACG AGGGGGATCG ACTGGGAAGA
CTTAATTTAA GCAAGGAGGG CATGCGCCAA CGAGATGAAA CTGTCTTTCA GTTTGCACTA
GACCGCAAAC TATCCGTTGC TTTCTCGATG GCAGGCGGTT ATGGCAAGGA AATAGACTCT
ACTGTGGATA TTCATTTCCA AACCATTCAA ACCGCTGTGG CATTTCAGGG GCTTTACTAA
|
|---|
| Protein sequence | MKAYYSDHFV LPLPTGHRFP MEKYSRLRDL VGTLSSVETI EAPAASDTQI LYCHDPQYLI
KVIEGKLSPQ EQKEIGFPWS VKMVERSRRS AGATVAAAKT ALEEGIAANL AGGTHHAYRA
IGSGFCVFND SAIAARTLQK EISPHLKIAV IDLDVHQGNG TAAILQNDPS IFTLSIHGEN
NFPFKKEQSD LDLGLPDGCE DKLYLNALCK ALEELESRFK ADCIIYLAGA DPHEGDRLGR
LNLSKEGMRQ RDETVFQFAL DRKLSVAFSM AGGYGKEIDS TVDIHFQTIQ TAVAFQGLY
|
|---|
| |