Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1513 |
Symbol | |
ID | 5052425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1587824 |
End bp | 1589743 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640471686 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001156291 |
Protein GI | 145589694 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCCTG AGTTTGGACA TTACGCACTC ATTCTGGCTC TATGCATCTC CTTAATTCAG GGGGTATTAC CTTTGCTCGG AGCGCATTAT GGTCGCCGTG AATGGTTGGT ATTGGCTAGA CCTGCTGCCC AAGCCTTATT TTTATTATTA GCGATTGCCT TTGGAATCTT GGCATGGAGT TTTTACGTTA ATGATTTTTC TGTGCTTTAT GTAGCCGAGC ACTCTAACTC CCAATTGCCG GTAATTTATC GCTTAGGGGC GGTCTGGGGC GGACATGAAG GCTCGCTACT TCTGTGGATC TTTTTATTAA GTACCTGGAC TATCTTAGTG GCGCAACTCT CTAAAGCTTT AGACGAGTTC ATGGTGGCAC GAGTGATTGG TGTCTTAGGT TTGGTTGCTA GTGGTTTATT GCTATTTGTT TTAACTACTT CCAATCCTTT TGAGCGTTTA CTGCCTGCAG CGCAAGATGG CCGTTCACTA AATCCTTTAT TGCAAGATCC CGGATTAGTG TTTCATCCGC CAATGCTCTA TATGGGATAC GTCGGTTTTT CAGTGGCCTT TGCTTTTGCT ATTGCGTCAT TGTTATCTGG CCGATTGGAT GCCGCTTGGG CTCGCTGGTC TAGACCTTGG ACCACTGCAG CGTGGGTATT TTTAACTCTC GGTATAGCAC TGGGTTCTTG GTGGGCTTAT TACGAATTGG GTTGGGGTGG TTGGTGGTTT TGGGATCCTG TAGAAAACGC TTCATTTATA CCTTGGCTGG TCGGCACCGC TTTATTGCAT TCATTGGCGG TTACTGAAAA GCGTGGTGGC TTCAAAAGCT GGACAGTGTT ACTGGCGATC ACTGCGTTCT CACTCTCTTT ATTGGGAACA TTTTTAGTGC GCTCTGGGGT ACTCACTTCA GTGCATGCCT TTGCAACTGA TCCACGACGC GGTATTTTTA TTCTGATTTT TCTTTCCTTG GTGGTGGGTT CTTCATTAAC CCTCTATGCA TGGCGAGCAC CTAAAAGTTC CTTGGGCGGC AAATTTAATT TGAGCTCAAG AGAGACTTTT ATCTTGCTAG GAAATGTATT TTTAGTAGTG TCCGCAGGCT CAGTACTGCT AGGAACGCTC TATCCATTAT TAATTGATGC ATTACACCTT GGGAAGATTT CAGTAGGCCC CCCGTATTTC AATAGCGTAT TTGTGCCGAT CATGGTTCCC TTGTTGGTTC TCATGGGAAT AGGCCCTTGG ACTAATTGGA AAAATACTAA TCTAATCCTT GTGATTAAGC GCCTTTGGTT AGCAGGATTA GTTGCAGTAA TTGCTGGAGT GCTGATACCA CTAATCATGG GCCAATTTAC TTGGCTTGCC GGGCTTGGTT TTCTACTAGC ATTTTGGGTC ATTGCTTCCG GATGTATGCA GATTGTTCGT CAGGCCAAAG CAGGCAAGCC AACGCGTTCA TTTATCGGTA TGCAAATAGC TCATCTCGGG ATTGCCATCT TTGTGATTGG CGTCACGATG GTAGGTGCTT ATCAAGAGGA AAAAGATGTT CGCATGTTGG CTGGTGAATC GGTGACTGTT GGTGGATATC AAATTCAGCT CCAAGGCGTT AATCCTGTAG CCGGACCGAA TTACAAAGCG ATACGAGGTA GCTTTTTATT GAGCAAGGAT GGCGTTGCCC AAGCAACCCT AAACCCTGAG AAGCGTAGCT ATTTTTCTTC TACGATGCCC ATGACTGAAG CGGCAATCAA TGCAGGCTTA ACCAGAGATA TTTATGTTTC TTTGGGTGAA GAACTCGACG ATAAATCTTG GGCTGTTAGG GTTTATTACA AGCCGTTTGT TGATTGGATT TGGGGCGGAT GTTTATTGAT GGCCTTGGGT GGTGTTTTGG CGATATCCGA TAAGCGCTAT CGCATCAAAT TAAAAAGAGT GGGTTCATGA
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Protein sequence | MIPEFGHYAL ILALCISLIQ GVLPLLGAHY GRREWLVLAR PAAQALFLLL AIAFGILAWS FYVNDFSVLY VAEHSNSQLP VIYRLGAVWG GHEGSLLLWI FLLSTWTILV AQLSKALDEF MVARVIGVLG LVASGLLLFV LTTSNPFERL LPAAQDGRSL NPLLQDPGLV FHPPMLYMGY VGFSVAFAFA IASLLSGRLD AAWARWSRPW TTAAWVFLTL GIALGSWWAY YELGWGGWWF WDPVENASFI PWLVGTALLH SLAVTEKRGG FKSWTVLLAI TAFSLSLLGT FLVRSGVLTS VHAFATDPRR GIFILIFLSL VVGSSLTLYA WRAPKSSLGG KFNLSSRETF ILLGNVFLVV SAGSVLLGTL YPLLIDALHL GKISVGPPYF NSVFVPIMVP LLVLMGIGPW TNWKNTNLIL VIKRLWLAGL VAVIAGVLIP LIMGQFTWLA GLGFLLAFWV IASGCMQIVR QAKAGKPTRS FIGMQIAHLG IAIFVIGVTM VGAYQEEKDV RMLAGESVTV GGYQIQLQGV NPVAGPNYKA IRGSFLLSKD GVAQATLNPE KRSYFSSTMP MTEAAINAGL TRDIYVSLGE ELDDKSWAVR VYYKPFVDWI WGGCLLMALG GVLAISDKRY RIKLKRVGS
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