| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1509 |
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| Symbol | |
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| ID | 5053729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1584283 |
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| End bp | 1585584 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640471682 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001156287 |
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| Protein GI | 145589690 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCAT TAAAAAAATA TCTCTACAAC CCTTTTGCAT TGGTCATTGG ATTCTGCGTT
CTATTAATTT CTATTTTTGC AGTGCTTTGG ATCTTAGTTC CGCCTCCACC AAAAGTCATT
GAGGTGGCTA CTGGTTTTCC AACGGGACTG TACTACCAGT TTGGTGAGCG TTTAAAGGCC
GAGGTGGCTA GCGAGGGTGT GACCTTAAAT GTCAAAGCAA CCGGTGGCAC TATTGATAAT
TTGGCCTTAT TAGCTGATCC CAACTCAGGC GTTAACTTTG CAATGGTGCA AGGAGGAGTC
GCTGATGTTT CTAAATATCC GCATTTGGTC TCTATAGCGG GTATGTTTTA TGAGCCGGTT
TGGGTTTGGT ATCGAGAGTC TGCATTCAAA GCTGATGGCG GCCGCTTACA AGTTCTCGGT
CAGCTCAAAG GAAAGCGCGT GGCCATAGGC AATGAGGGAA GCGGCACTCT AGCCCTATCT
ACTGCATTGC TTAAGGCTAG CGGAATTTCC GAAGACCAAT TACACACTCA AAGACTCAAA
CCTGATCAGG CTCTAGAGAA GCTATCTAAG GGCGACTTGG ACGCTGTATT TATTGTGGCT
GCTGCCGAGG CACCAGTGCT TGATAAGTTT TACCAAATTC CCGGCATTCA TGTGATGAGC
TTTGATCAAG CAGACGCTTA TACGAGAAAC ATGCCTTACT TATCTAAGGT AACCGTTCCA
CGTGGATTAT TAAGTATTGA ATATGATCTA CCACGCCAAG ATATACAAGT AATCGCACCA
ACTGCAACAT TAGTCACTCG TGACAATGTC AGTCCTGCCA TGATTTCCTT AATGTTAAGT
GCCTCTTACG ATATTTTGAA ATCGTATTCG CGTTTACAAA AGGTGGGGGA GTTTCCATCT
AGTTCGGGAA TGGATTTTCC GCTTCACGTT GATGCTGAAA TTTATCTCAA GGATGGACCA
TCATTCTTGC ATCGCCACTT ACCATTTTGG ACTGCGGTCT GGGTAGGGCG TTTTGCGAAG
ATTGTCATTC CTTTGCTCGT GATTTTTATC CCCCTCTTTA CTTATGTCCC AACGGCGAAG
AACTTTTTAT TACGCTTAAA GCTTGCTCGC GTTTACGCAG AACTGCGAGA AATTGAAAAA
AATGCCCATA ACCCAGCTAT GCGGGATAAG AACTTTAAGG ATTTGGAAGC GATTGAAAAT
CGAGTTGGCA ATATCAAAGT TTCGATGATG GATTCAAAAG AACTTTATGA CCTTAAGGGG
CATGTAGGAG ATGTACGTGC GCGCTTAAAT CTTCATGCTT AA
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| Protein sequence | MTSLKKYLYN PFALVIGFCV LLISIFAVLW ILVPPPPKVI EVATGFPTGL YYQFGERLKA
EVASEGVTLN VKATGGTIDN LALLADPNSG VNFAMVQGGV ADVSKYPHLV SIAGMFYEPV
WVWYRESAFK ADGGRLQVLG QLKGKRVAIG NEGSGTLALS TALLKASGIS EDQLHTQRLK
PDQALEKLSK GDLDAVFIVA AAEAPVLDKF YQIPGIHVMS FDQADAYTRN MPYLSKVTVP
RGLLSIEYDL PRQDIQVIAP TATLVTRDNV SPAMISLMLS ASYDILKSYS RLQKVGEFPS
SSGMDFPLHV DAEIYLKDGP SFLHRHLPFW TAVWVGRFAK IVIPLLVIFI PLFTYVPTAK
NFLLRLKLAR VYAELREIEK NAHNPAMRDK NFKDLEAIEN RVGNIKVSMM DSKELYDLKG
HVGDVRARLN LHA
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