Gene Pnuc_1459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1459 
Symbol 
ID5052851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp1534290 
End bp1535441 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content46% 
IMG OID640471631 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001156237 
Protein GI145589640 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCA CTCTCGAGCT AACTGAAGCT CTCATTGCTT GCCATTCTGT AACGCCAGCC 
GATGGTGGCT GCCAAGATTT AATTGCCAAA AGACTACAAG CGATTGGCTT TCATACAGAG 
AGCGTTGTGA GTGGACCAGA AAATTTTCAA GTCACCAACT TATGGGCAAT CAAAAAAGGC 
AAAGCCGGCG ATCAAGGCAA AGTCTTGATG TTTGCCGGTC ATACTGACGT GGTGCCTACT 
GGCCCTTTAG AAAAGTGGAC CAGCGATCCC TTTACGCCAA CTATTCGCGA TGGCATGCTT 
TATGGTCGCG GCGCGGCTGA TATGAAAACT TCTTTAGCGG CGTTTGTGGT GGCTACTGAA 
GAATTTGTAA CTATGCATCC AGATCATCAA GGTGCAATTG CTTTCTTGAT TACTAGTGAT 
GAAGAAGGTC CTGCGAACGA TGGCACAGTC ATCATGTGTG AGCGCTTACA AAAGCACCAG 
CAACGCTTGG ACTACTGCGT AATCGGCGAG CCGACATCAG TTGATCAACT GGGCGACATG 
ATAAAAAATG GTCGTCGCGG ATCACTCTCG GGCAAGTTAA AAATTAAGGG TATTCAAGCG 
CATATCGCTT ACCCGCACTT AGGCAAGAAC CCCATTCATC TCTCCGCACC GGCAATTACT 
GCCTTAGTAG AAACTGAGTG GGACAAAGGC AATGAATATT TTCAGCCTAC CAGTTTTCAG 
ATGTCAAATA TTCACGCTGG TACAGGTGCG AATAACGTGA TTCCTGGTGA ATTGACGATT 
GATTTCAACT TCCGCTTCTC TACTGAAAGT AAGCCAGAGC AATTACGCGA ACGTCTTGAA 
TCTATTCTCA AGAATGCCGG TCTCGATTTT GAAATTAACT GGGTATTAGG TGGCAGCCCA 
TTCATCACAG GTGATGGTGA TTTGGCTGGC GCATTGCGCA AGGCTATTAA GACCGAAACC 
CAGATCGATA CCGAGCTTTC TACTACTGGC GGCACCAGCG ATGGTCGCTT TATCGCCAAG 
ATTTGCAAAG AAGTTGTGGA ATTTGGCCCC CTCAATGTAA CCAGTCACAA AATTGATGAG 
TGCGTCATTG TGGATGACGT AGTTCCACTT AAAAATATCT ATCGCAAGAC ACTTGAGCAA 
TTGATTGCTT AA
 
Protein sequence
MSATLELTEA LIACHSVTPA DGGCQDLIAK RLQAIGFHTE SVVSGPENFQ VTNLWAIKKG 
KAGDQGKVLM FAGHTDVVPT GPLEKWTSDP FTPTIRDGML YGRGAADMKT SLAAFVVATE 
EFVTMHPDHQ GAIAFLITSD EEGPANDGTV IMCERLQKHQ QRLDYCVIGE PTSVDQLGDM 
IKNGRRGSLS GKLKIKGIQA HIAYPHLGKN PIHLSAPAIT ALVETEWDKG NEYFQPTSFQ 
MSNIHAGTGA NNVIPGELTI DFNFRFSTES KPEQLRERLE SILKNAGLDF EINWVLGGSP 
FITGDGDLAG ALRKAIKTET QIDTELSTTG GTSDGRFIAK ICKEVVEFGP LNVTSHKIDE 
CVIVDDVVPL KNIYRKTLEQ LIA