| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1458 |
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| Symbol | dapD |
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| ID | 5052309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1533452 |
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| End bp | 1534279 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640471630 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001156236 |
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| Protein GI | 145589639 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAT CACCACAAAG CATCATTGAA CAAGCCTGGG AAAACCGCGC AAACCTCTCG
CCAGAAAGCG CTCCCGCGGA CATCCGTAGC GCCGTAAATG CAGTTCTGGA GGGCCTCAAT
GCAGGCACTA TTCGCGTTGC TGAGCGCCGC GATGTCGGAA AGTGGGAGGT AAATCAATGG
GTTAAGAAAG CCGTTTTGCT TTCTTTCCGC CTAGAAGACA ACAAACCTAT GGGCGCTGGT
GGCTATACCC AGTTTTATGA CAAGGTTCCT AGTAAGTTTG AAAACTACAC AGCAGCTGAC
TTTGCTGCTG GCGGCTTTCG GGTAGTACCC CCCGCCGTAG CTCGTCGAGG CTCATTTATC
GGCAAAAACG CTGTTTTGAT GCCTTCCTAC GTCAATATTG GTGCCTATGT AGGCGAAGGC
ACCATGGTGG ACACTTGGGC AACGGTTGGT TCTTGCGCTC AAATCGGTAA AAACGTTCAC
CTTTCTGGTG GCGTTGGTAT TGGCGGAGTT TTGGAGCCAA TCCAGGCTGG ACCAGTCATT
ATTGAAGATA ACTGCTTTAT TGGCGCACGC TCTGAAGTAG TTGAAGGCGT TGTCATTGAA
GAAAATGCCG TTCTCTCTAT GGGCGTTTAT ATTGGTCAAA GCACCAAAAT TTACGATCGC
GAAACTGGCG AAGTTCATTA CGGACGTGTT CCAGCTGGCT CAGTGGTTGT TCCTGGATCC
CTGCCTTCAG CATGCGGAAA GTACAGTCTC TATGCTGCAA TCATCGTCAA GAAAGTCGAT
GCGCAAACCA GAGCTAAAAC AGCCATCAAT GAACTCCTAC GCGATTAA
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| Protein sequence | MSQSPQSIIE QAWENRANLS PESAPADIRS AVNAVLEGLN AGTIRVAERR DVGKWEVNQW
VKKAVLLSFR LEDNKPMGAG GYTQFYDKVP SKFENYTAAD FAAGGFRVVP PAVARRGSFI
GKNAVLMPSY VNIGAYVGEG TMVDTWATVG SCAQIGKNVH LSGGVGIGGV LEPIQAGPVI
IEDNCFIGAR SEVVEGVVIE ENAVLSMGVY IGQSTKIYDR ETGEVHYGRV PAGSVVVPGS
LPSACGKYSL YAAIIVKKVD AQTRAKTAIN ELLRD
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