| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1457 |
|---|
| Symbol | |
|---|
| ID | 5052637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1529756 |
|---|
| End bp | 1533277 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640471629 |
|---|
| Product | chromosome segregation protein SMC |
|---|
| Protein accession | YP_001156235 |
|---|
| Protein GI | 145589638 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG1196] Chromosome segregation ATPases |
|---|
| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAACTGA AATCCATCAA ACTTTCCGGC TTTAAGTCTT TCGTAGACCC AACCCATTTT
GAAATGCCTG GCCAATTAAT TGGTGTTGTA GGTCCAAACG GTTGCGGAAA GTCGAACATT
ATTGACGCAG TACGTTGGGT TTTGGGTGAA TCCCGCGCTA GTGAATTACG CGGTGAGTCA
ATGCAGGACG TTATTTTTAA TGGTTCTGGA TTGCGTAAGC CTTCTGGCCG TGCCAGTGTC
GAACTCATTT TTGATAACAC TGAGGGGCGC GCTCAAGGTC AATGGGGAGC TTTTACAGAA
TTAGGTATTA AACGTGTTTT GACGCGTGAT GGAAATTCTA GCTATTACGT AAATAACCAA
GTAGTACGCC GTAAAGATAT CCAAGATATT TTCTTGGGTA CCGGTATGGG TCCACGAGGT
TACGCCATTA TTGGCCAGGG AACAATTAAT CGCATTCTGG AATCTAAGCC AGAAGAGTTG
CGTGTTTTCT TGGAAGAGGC AGCAGGTGTT TCTAAATATA AAGAGCGCCG CAAAGAAACT
GCTTCACGCC TAGAAGATAC TGCTGAAAAT TTAACTCGTG TTGAAGATAT CTTACGAGAG
CTTGATCAGC AATTAACTCG CTTAGAAAAA CAAGCGACAG TAGCCGAGCG TCACGCAGAG
CTTTCTACGC AAATGAAATC GCAGCAACAA CTGCTTTGGT TTGTTCGACA GACTGAAGCT
GGCAAAGAGC AAGAGCGTCA TGCTAATGGC ATCCGCGATA CTCAAGTGAA TTTGGAAGAA
CAGACCGCAA AGCTACGTCA CGCCGAAGCC GAGCTCGAAA CCATGCGTAC CCAACAGTAC
GCATTGCAGG ATAAGGTTTC TGAAGCGCAA GGTGAGCTCT ATCAGACCAA TGCCGATGTG
AGTCAAGTTG AATCACAAAT CCATTATGTG CAAGAAGCGC GTCAACGTTT GCAACAACAA
ACGCAAGACT TACAAGCGCA ATTACAGCGC TGGACAGTTC AAGAAACTGA TGCAGCACAA
GCGCAGCGGA CTGCTGAACA TGAATTGAGT TTAGCTTCCG AAAAGGAACA AACTTTATTA
GCTGATTTAG GTAGCCAGCA AGAACAGATG CCAGGTCGTG AAGAAGCGTA TCAAGCTTCT
GCGCGCGAAC TCAATCATGC GCGTGAAAGT TTAGCCTCTA TCGAACAACG TTTAGCCAGT
TTGGGTGAAC GTATTCGTGC AATGTCAGCA CAAGCCGATG AATTAAAAGG GCGCGAAGCA
CGTCTCACTG GTGAGTTGGA TGGTATGCGT CGCCCAGATG CGGATGCTTT ACAAATGGCG
ATTGACCGTC ATGCTATGGC GCAACGCAAA GTAGAAGAGG CTAAGCAGCG TGCTGGCGAG
ACACAACAGC GCGTTCCAGC TGCTGATGAA GCCCGCAATG CCGCGCAGCA AAAAATTCAA
AGTGCAAATC AAGATTTGGC TCAGACCGAA GCAAAACTTA CCGCGTTAAC TGCTTTGCAG
GCTAGTGTCC AAGCCCAAGG AAAGATTGGC CCGTGGCTAG AAAGCAAAGG GCTCAAAGAA
AGTAAGCGCC TATGGCAAGA GCTGAAGGTT GAAAGCGGCT GGGAAGCCGC GCTGGAATCC
GTTTTACGTG AGCGTTTAGC TGCAGTAACA GCTAAAAGCG TCCAAGAAAC TTTGGCTTTG
GCCAACGATG CTCCACCAAG CCGCTTAGCT ATTTTGCTTG CAGAAGACAT TACACCTGCA
CACACTTCAG CACCTGCGGA CTTCACTCCT CTATTAAGTC GAGTGCAAAG CGCCGGTGGC
GCACGATTAA CATCTGTATT GCAAGAGTGG TTAGATAATA TTTATATCGC AAGCAGTCTT
GAGGATGCCT TGCATCGTCG CGAGAAGTTG CCAGCAGGCG GTGCATTTGT TACTCAACAG
GGCCATTTAG TCAGTCGCGT TAGCGTGCAG TTATACGCGG CCGATTCAGA GCAGGCTGGT
ATGTTGGCGC GGGCTCAAGA GATGGAAAGT CTCGAGAAGC AATTGCGTGC GCAACAATTA
ATGCAAAGCG AATTGAAGGG CGATCTTGAT CAATGTGTCG CTAATTATCA AGCTGCACAT
CAGGCTGCTG AGCAAGCGCG TATCAATGCC GAGCATGCAG TTCAAGAGGC GCATGGTTTT
GAAGTAGAGA GAATGCAGTT GACTCAAGCT GAAGAGCAAT ACAGTCAACG CGCCGCACAA
ATACAGGGTG AGCTAAGTGA ATTGCGCCAG CAAATGGAAC AACTAGCGCT TAACCAAGAG
CAGTCTGCTG CTGAATTGCT TGAGTCTGAA GAATCTAAAC AAGGCCTCCA AGAGGCGTTG
TCTTTCGCTC AAGAGAAATT AGAGATGGCA ACGCAAGAGC GCGATCGTTT GCGCGAGTCC
TTACGCATTG CTGAGATGGC TGCCCAAGAA GCTGCATTTG CTTCACGTTC ATTGCAGCAA
CGTATTGCGG ATTTACAGCG CGACCAAAGC ACCGCACGCA ATCAGATCAT GGAGATTCAG
GACAAGCATG ATCAAGCAAC ACAAGAGTTG CAGGCTTTAA GTGATGAAGA AGCGCAAGAT
AAATTGCAAG GCTTGTTGTT GGCTCGCAGC GCACGCGAAG CTGCTTTGGC AAATGCCCGC
ACAGAACAAG ACGCTTTATT GCATCAATTA CGTGAGGCTG ATGAGGCGCG TTTGCAGGTA
GAGCGAAGCT TACAGCCGAT GCGTGACAAA GTAGTTGATT TGCAATTACG TGAGCAGGCT
GCCCGTTTGA ATTTTGAACA GTTTGCTACC TTGTTGTCCG ACGCTGAAGC CGACCTCATC
GCTCTTGAAG CAAATTTCAG CTCTGATCTT AAAGTAGGCG CCTTACAAAG CGAAGTAACC
CGTCTAAATA CTGAAATTCA GTCTTTAGGC CCAGTCAATA TGGCTGCTTT GGATGAGTTG
TCTAGTTCCC GTGAGCGTAA GCAGTTCTTA GATGCGCAAT CTGCCGACTT GAATGAAGCG
ATGCAAACCT TGACTGATGC GATTGCCAAG ATTGATGCAG AGACACGCGA TTTATTGCAG
GGTACCTTCG ATCAAGTAAA TACCCATTTC GGAAAATTAT TCCCAGAACT ATTTGGCGGT
GGCCACGCTG AGTTGGTCAT GACAGGTGAA GAAATCCTAG ATTCTGGCGT TCAAGTGATG
GCTCAACCTC CAGGCAAGAA AAACAGCAGT ATTTACTTGC TCTCAGGTGG CGAAAAAGCC
TTGACTGCTA TTGCACTAGT GTTCTCGCTC TTCCTTTTGA ACCCAGCGCC GTTCTGCTTG
CTTGATGAGG TGGATGCTCC ATTGGATGAT GCAAATACCT TGCGCTATGC GCAGCTAGTT
GCCAAAATGT CAGACAAGAC GCAGTTTTTG TTCATTTCTC ATAACAAGAT CACTATGGAA
ATTGCCCACC AGTTAATTGG TGTCACGATG CAAGAGCAGG GTGTTTCCCG CATTGTTGCG
GTGGACATCT CTTCAGCTGT CTCTATGGTG GAGGCTGCTT AA
|
|---|
| Protein sequence | MQLKSIKLSG FKSFVDPTHF EMPGQLIGVV GPNGCGKSNI IDAVRWVLGE SRASELRGES
MQDVIFNGSG LRKPSGRASV ELIFDNTEGR AQGQWGAFTE LGIKRVLTRD GNSSYYVNNQ
VVRRKDIQDI FLGTGMGPRG YAIIGQGTIN RILESKPEEL RVFLEEAAGV SKYKERRKET
ASRLEDTAEN LTRVEDILRE LDQQLTRLEK QATVAERHAE LSTQMKSQQQ LLWFVRQTEA
GKEQERHANG IRDTQVNLEE QTAKLRHAEA ELETMRTQQY ALQDKVSEAQ GELYQTNADV
SQVESQIHYV QEARQRLQQQ TQDLQAQLQR WTVQETDAAQ AQRTAEHELS LASEKEQTLL
ADLGSQQEQM PGREEAYQAS ARELNHARES LASIEQRLAS LGERIRAMSA QADELKGREA
RLTGELDGMR RPDADALQMA IDRHAMAQRK VEEAKQRAGE TQQRVPAADE ARNAAQQKIQ
SANQDLAQTE AKLTALTALQ ASVQAQGKIG PWLESKGLKE SKRLWQELKV ESGWEAALES
VLRERLAAVT AKSVQETLAL ANDAPPSRLA ILLAEDITPA HTSAPADFTP LLSRVQSAGG
ARLTSVLQEW LDNIYIASSL EDALHRREKL PAGGAFVTQQ GHLVSRVSVQ LYAADSEQAG
MLARAQEMES LEKQLRAQQL MQSELKGDLD QCVANYQAAH QAAEQARINA EHAVQEAHGF
EVERMQLTQA EEQYSQRAAQ IQGELSELRQ QMEQLALNQE QSAAELLESE ESKQGLQEAL
SFAQEKLEMA TQERDRLRES LRIAEMAAQE AAFASRSLQQ RIADLQRDQS TARNQIMEIQ
DKHDQATQEL QALSDEEAQD KLQGLLLARS AREAALANAR TEQDALLHQL READEARLQV
ERSLQPMRDK VVDLQLREQA ARLNFEQFAT LLSDAEADLI ALEANFSSDL KVGALQSEVT
RLNTEIQSLG PVNMAALDEL SSSRERKQFL DAQSADLNEA MQTLTDAIAK IDAETRDLLQ
GTFDQVNTHF GKLFPELFGG GHAELVMTGE EILDSGVQVM AQPPGKKNSS IYLLSGGEKA
LTAIALVFSL FLLNPAPFCL LDEVDAPLDD ANTLRYAQLV AKMSDKTQFL FISHNKITME
IAHQLIGVTM QEQGVSRIVA VDISSAVSMV EAA
|
|---|
| |