| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1443 |
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| Symbol | |
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| ID | 5053949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1512965 |
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| End bp | 1515241 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640471615 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001156221 |
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| Protein GI | 145589624 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.380953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGCG TCAATGCGCA TGCAGCAGAC TCCTTTGTGG TGAAGGATAT TCGGGTTGAA
GGTTTACAGC GCGTAGAGCC AGGAACGGTA TTTAGTTATT TGCCGGTTCA AGTGGGTGAC
ACCTTTAACG AAGAAAAAAG TACCGAAGCT ATTAAGGCTT TATATAGCAC TGGCTTTTTT
AGGGACGTTC AAATTCAGGC GCAAGGTAAT GTATTGATCG TCATTGTCGA AGAGCGCCCA
ACTATTTCAC GTATCGAGTT CACCGGGATG AAGGAATTTG ACCCGGACTT AGTGAGAAAG
TCTTTGAAGG CTGTTGGTGT AGCAGAAGCT CGTTTTTACG ACAAGGCGCT TATTGATAAA
GCTGAGCAAG AATTAAAGCG TCAGTATGTT GGTAAAGGGA TGTTTGCGGC AGAGGTGGTG
GCTACTGTTA CCCCGCTTGA GCGCAATCAG GTGGCCGTTT ATTTCAATAT TGATGAAGGC
CCGGTTGCCA AAATTCAAGA AATTAACTTT ATTGGCAATG AAGAGTTTAG TGAGAGCACA
CTCAATAGCC AAATGCAGTT AAAGACGGGT GGATGGTTAT CTTGGTATAG CAAGGACAAC
CAGTATTCCA AGCAAAAGCT GACAGCCGAT TTAGAAAGTA TTCGCTCTTA TTATTTAAAT
CGAGGCTATC TCGAATTTGT GATTGAATCC ACTCAGGTTT CTATTACCCC TGATAAAAAA
GGCATCTTCC TCACCATCAG CATTCGTGAA GGAAAAAAAT TCACGGTGAA GGATGTTCGT
CTGGCTGGTG ATTTATTGGG TAAAGAATCT GAGTTTATGA AGCTGATCAC CCTTAAACAG
GGCGATACTT ACTCATCGGC TAAACTCACA GAAAGCACTA AGGCAATTGC CGAAGTATTA
GGAACGTATG GCTATGCTTT TGCAACAGTA AATCCTCAGC CAGATGTGCG TCGTGACTTA
GCAGAAGTTG ATCTCACCTT GGTGATTGAT CCGGGGCGCC GTATTTATGT TCGCCAAGTG
GCCATTAGTG GAAATGCAAA AACACGTGAC GTAGTCATAC GACGTGAAAT GCGTCAATTT
GAAAGTTCTT GGTTTGACAG CGATAAGATT GAGCTATCAA AGAAGCGTTT AGGTAGGTTG
GGCTACTTTA CCGAGACTGA TATTGCCACA GAAGATGTTC CGGGCTCTCC AGACCAGGTT
GACGTGAACG TAAAGGTCAC AGAAAAGCCA ACAGGAGCCA TCACTCTGGG CGCAGGCTTT
TCCTCAACTG AGAAATTAAT TTTATCTGCT GGTATCAATC AAGATAATGC GTTCGGCACC
GGAACAGCCA TCGGCTTGAA TATGTCATTA GGAAAAATTA ATCAGAATTT AACGCTGTCA
AACTATGACC CGTATTTCAC TGAAGAGGGT ATCAGTCGTT ACACTGATTT GTACTATAGA
TCTTCAAAGC CGCTTTATTA CATTGGCGAT CCAGATTACC AAATTAAAAA CGTGGGCTCA
AATATTAAAT TTGGTGTTCC GTATACAGAG GTCGATCGCG TATTTTTTGG TACTGGTTTT
GAAGCCTTCC AAATTAATAC AACTTCTAAT ACCCCTATTC CGTATTTAAA TTATGCGCAA
AGTTATGGCG TCGCTGCTCC TGGCTATCCA GCCACCTTAA ACACTTATAA CGTTCCAGTA
ACTGTAGGTT GGTCGCGCGA TGGGCGAGAT AGTGCTCTAA TTCCCTCGGA GGGTTCTTTA
GAGCAGCTGT CTGGTGAGGT TGGTACTCCG GTTGCCAATA TGAATTTCTA TCGTGTGTAC
GGGCAATATC AAAAGTATCA CTCTTTTTCC AAGGGAAATA TCTTGTCCTT TAATGGCGAG
GTTGGATATG GTCAGGCTTA CGGTAGCAAT CCCTTCCCAA TTACTAAAAA TTACTATGTT
GGTGGTATTG GATCGGTACG CGGTTATTCC CCCGGTTCCT TGGGTCCGCA GTATTACAAC
ACGAATACTG GGTCTTATCA GCCTACCGGT GGTCAGTCAA AGATCGTGAC GAATATTGAG
TACACGGTGC CTGTGCCTGG GTCCGGAACT GACAAAACGT TAAGAGCCTT TACCTTTATC
GACGGCGGTA ATGCTTTTGG TCAAAACCTG AACCTAGTCT TAAGATACTC CTATGGTTTG
GGTATATCAT GGATATCACC GTTAGGACCA CTGAAGTTTA GTTATGGTAT TCCGTACAAA
TCTCAGCCAA CGGATAACAT TCAACGTTTG CAGTTCCAGG TTGGAACAGC GTTTTAA
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| Protein sequence | MFSVNAHAAD SFVVKDIRVE GLQRVEPGTV FSYLPVQVGD TFNEEKSTEA IKALYSTGFF
RDVQIQAQGN VLIVIVEERP TISRIEFTGM KEFDPDLVRK SLKAVGVAEA RFYDKALIDK
AEQELKRQYV GKGMFAAEVV ATVTPLERNQ VAVYFNIDEG PVAKIQEINF IGNEEFSEST
LNSQMQLKTG GWLSWYSKDN QYSKQKLTAD LESIRSYYLN RGYLEFVIES TQVSITPDKK
GIFLTISIRE GKKFTVKDVR LAGDLLGKES EFMKLITLKQ GDTYSSAKLT ESTKAIAEVL
GTYGYAFATV NPQPDVRRDL AEVDLTLVID PGRRIYVRQV AISGNAKTRD VVIRREMRQF
ESSWFDSDKI ELSKKRLGRL GYFTETDIAT EDVPGSPDQV DVNVKVTEKP TGAITLGAGF
SSTEKLILSA GINQDNAFGT GTAIGLNMSL GKINQNLTLS NYDPYFTEEG ISRYTDLYYR
SSKPLYYIGD PDYQIKNVGS NIKFGVPYTE VDRVFFGTGF EAFQINTTSN TPIPYLNYAQ
SYGVAAPGYP ATLNTYNVPV TVGWSRDGRD SALIPSEGSL EQLSGEVGTP VANMNFYRVY
GQYQKYHSFS KGNILSFNGE VGYGQAYGSN PFPITKNYYV GGIGSVRGYS PGSLGPQYYN
TNTGSYQPTG GQSKIVTNIE YTVPVPGSGT DKTLRAFTFI DGGNAFGQNL NLVLRYSYGL
GISWISPLGP LKFSYGIPYK SQPTDNIQRL QFQVGTAF
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