Gene Pnuc_1426 details

Gene Information

• Locus tag: Pnuc_1426
• Symbol: smpB
• ID: 5053514
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 1496429
• End bp: 1496881
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640471598
• Product: SsrA-binding protein
• Protein accession: YP_001156204
• Protein GI: 145589607
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATCG TCGATAACAA AAAAGCCTTC TTTGATTATT TTATCGAGGA GCGGTTTGAG 
GCTGGGCTTG TGCTAGAAGG CTGGGAAGTA AAAGCCATCC GCGCAGGTCG TGTGCACGTC 
AAGGAAGCCT ATGTGGTGAT TCGCAAGGCG GAGCTATTCC TGATTGGCTG CCATATCACC 
CCACTACTAT CGGCCTCTAC TCATATTGTT CCAGACAGTA CCCGCACTCG GAAGCTCCTA 
TTAAATGCCA TTGAAATACG CAAACTGATC GGCAAAGTGG AGCAAAAAGG CTATACCCTG 
GTCCCACTCA ACTTGCACTT CACCAAAGGT AATGTGAAGT GTGAAATTGG TCTGGCGCGC 
GGTAAAAAGC AGCATGACAA GCGCGCAGCT ACGAAAGAGC GGGAATGGGA AGTCCAAAAA 
GGTCGAATTG CTCGGGGCGA CCTCAACGCC TGA 

 

Protein sequence

MSIVDNKKAF FDYFIEERFE AGLVLEGWEV KAIRAGRVHV KEAYVVIRKA ELFLIGCHIT 
PLLSASTHIV PDSTRTRKLL LNAIEIRKLI GKVEQKGYTL VPLNLHFTKG NVKCEIGLAR 
GKKQHDKRAA TKEREWEVQK GRIARGDLNA