Gene Pnuc_1386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1386 
Symbol 
ID5053921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1456513 
End bp1457289 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content46% 
IMG OID640471558 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001156164 
Protein GI145589567 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGACAT TAAAAGGTAA AACAGCATTA GTAACTGGTT CTACTAGCGG TATTGGTCTA 
GGTATGGCGA TTGCACTAGC TAAGCAGGGC GCCAACATCA TGGTGAATGG CTTTGGTGAA
AAAGATGATG CCCTTGCGCA AATTAAAGCC TGTGGCGTTG AGGTTGACTA CCACGGCGCG
GACATGAGCA AGCCAGCTGA AATTGAAGAT TTAATTAAGC AAACAGAAAA ACGTTTTGGC
TCATTAGATA TATTGGTGAA TAACGCAGGT ATTCAATACA CCGCCAACAT CGAAGATTTT
CCTGCGGATA AATGGGATGC CATTATTGCC ATCAATTTGA GTTCTGCGTT TCATACAACG
CATCATGCTC TGCCTGGAAT GCAAAAACGC AATTGGGGCC GTATTATTAA TATTGCATCA
GTGCATGGCT TAGTAGCGTC AACACAAAAG GCCGCGTATG TCGCGGCAAA ACACGGCATC
GTTGGACTCA CCAAGGTAAC CGCTTTGGAA AATGCGCGTA CCGGTATTAC TTGTAATGCA
ATTTGCCCAG GCTGGGTTCT CACTCCATTA GTTCAAAAAC AAGTTGATGC CCGCGCAGAG
CGAGATGGCG TTTCAAATGA AGCAGCAAAA ATTGCGCTCG TTTCTGAAAA ACAACCTTCT
GGACAATTTG TGACCCCTGA GCAATTGGCT GCTTTGGCTG TATTTTTATG TGGCCCAGAC
GCCTCTGAAG TCCGTGGGGT AGCCTGGAAT ATGGATGGTG GCTGGACTGC CCAGTAA
 
Protein sequence
MSTLKGKTAL VTGSTSGIGL GMAIALAKQG ANIMVNGFGE KDDALAQIKA CGVEVDYHGA 
DMSKPAEIED LIKQTEKRFG SLDILVNNAG IQYTANIEDF PADKWDAIIA INLSSAFHTT
HHALPGMQKR NWGRIINIAS VHGLVASTQK AAYVAAKHGI VGLTKVTALE NARTGITCNA
ICPGWVLTPL VQKQVDARAE RDGVSNEAAK IALVSEKQPS GQFVTPEQLA ALAVFLCGPD
ASEVRGVAWN MDGGWTAQ