| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1296 |
|---|
| Symbol | |
|---|
| ID | 5053166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1368319 |
|---|
| End bp | 1369140 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471468 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_001156074 |
|---|
| Protein GI | 145589477 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3298] Predicted 3'-5' exonuclease related to the exonuclease domain of PolB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00276744 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCG TACTGGTATT TGATATTGAG ACCATTCCGG ATGTTGCTGG CCTACGTCGT
CTGGAAAGTT ATCCGGATAC TTTAAGTGAT GCTGAAGTAG CTGCTCAAGC TATGACTGAG
CGAGCAGCCA AAACCGGCAG TGAATTTCTG CCTCTATTTC TGCAAAAGAT CGTTGCCATT
TCTTGTGTGA TTCGTAGAAC TACGAAAGAG GGTTCGCCTC AAATTAAAGT AGGTACTTTA
GGTACGCCGC AAGATGATGA AAAAGTCTTA ATTCAAACCT TTTTTGATTT GGTTGAGAAG
TACACCCCTC AATTGGTTTC TTGGAATGGC AGTGGTTTTG ATTTACCAGT ATTGCACTAT
CGTGCCCTAG CGAATCATGT TCAAGCGCCA CGTTATTGGG AAATGGGTGA GAGCCAAGAA
TCCGATAGTC GAGAATTCAA ATGGAATAAC TACATTAGTC GCTATCACAT GCGCCATCTA
GATATGATGG ATTTGCTGGC TAAATTTAAT GGCAGAGCCA ATGCTCCTTT AGATGGCCTA
GCTAAGCTCT GTGGCTTTCC TGGCAAGATG GGAATGGATG GCAGCCAAGT TTGGCCTGCT
TACCAAGAAG GAAAGATTAA CGATATTCGT CGTTATTGCG AAACCGATGT GGTCAATACC
TATCTCATGT ACTGCCGCTT TCAATTGCTC CGTGGTGGCT TTTCATTAGA GGAGTACCAA
GAGGAGATCG CTTTTGTGAA GGCCTATCTT GAAAAAGAAG CCAAGGAGCC TAACGGTGGG
CAGTGGCAAG AATATCTTCA AGGTTTTGCA GCGGATGCGT AG
|
|---|
| Protein sequence | MATVLVFDIE TIPDVAGLRR LESYPDTLSD AEVAAQAMTE RAAKTGSEFL PLFLQKIVAI
SCVIRRTTKE GSPQIKVGTL GTPQDDEKVL IQTFFDLVEK YTPQLVSWNG SGFDLPVLHY
RALANHVQAP RYWEMGESQE SDSREFKWNN YISRYHMRHL DMMDLLAKFN GRANAPLDGL
AKLCGFPGKM GMDGSQVWPA YQEGKINDIR RYCETDVVNT YLMYCRFQLL RGGFSLEEYQ
EEIAFVKAYL EKEAKEPNGG QWQEYLQGFA ADA
|
|---|
| |