| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1291 |
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| Symbol | ispG |
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| ID | 5053627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1362628 |
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| End bp | 1363899 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640471463 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001156069 |
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| Protein GI | 145589472 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0220337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCGA ATAATTCTTT ACCAAAGTTA CCATTAGGAC CATCCCCTAA GAGAGCAACA
CGTCAAGCAA CGGTTGCCTG GAAAACAAAC GTTATTACGG TTGGTGGCAA CGCGCCAGTC
CGCGTGCAGT CTATGACAAA TACCGATACT GCCGATGTAA TTGGCACTGC GATTCAAGTA
AAAGAATTGG CTCGCGCTGG TTCAGAGATG GTGCGGATTA CTGTAGATAC GCCAGCTGCT
GCGGCAGCCG TGCCTTACAT TCGTGAACAG CTAGACAAGA TGGATGTGTT GGTGCCGTTG
ATTGGCGACT TTCATTACAA CGGCCATACT TTATTAAATG ATTTTCCAGA GTGCGCTAAA
GCACTCTCCA AATATCGCAT CAATCCAGGC AATGTGGGTA AGGGCGCTAA GCGTGACCCA
CAATTTGCGC AGATGATTGA AGTGGCCTGC AAGTACGACA AGCCAGTCCG CATTGGTGTG
AATTGGGGTA GCTTGGATCA AGAGCTGTTA GCGAGCATTA TGGATAGCAA CGCAGCACTA
GCTACCCCAA AGACAGCTCA AGAAGTCATG ATCGAAGCAT TAATTCAATC GGCCTTGCAG
TCTGCAGAAA AAGCAGTAGA GCTGGGTATG AATCCAGACC AAATTTTGCT GTCTTGCAAG
GTGAGTAATG TGCAGGACTT GGTAGCTGTT TATCGCGATC TCTCACGTCG CTCTGATTAC
CCGCTCCATT TAGGCTTAAC TGAAGCAGGC ATGGGAAGCA AAGGGATTGT TGCTTCGACA
GCAGCTATGG GTATTTTGTT GCAAGAGGGT ATCGGCGATA CGATTCGAGT GTCATTAACC
CCTGATCCTG GCGCGCCACG TGAGAACGAG GTGATTGTTG CTCAAGAGAT TTTGCAAACC
ATGGGATTAC GTAATTTCAC ACCAATGGTT ATTGCCTGTC CAGGTTGTGG CAGAACAACT
AGTACGACAT TCCAAGAGTT AGCAGCCAAT ATTCAGTCCT ATTTGCGCCA ACAGATGCCG
GTTTGGAAAA AGACCCATCC TGGTGTGGAA GAAATGAATG TGGCTGTGAT GGGCTGCATT
GTCAACGGCC CCGGCGAGAG TAAGCATGCC AATATAGGTA TTTCTTTGCC GGGAACGGGT
GAAACACCCG CCGCCCCCGT ATTTGTCGAT GGTGTCAAAG TAAAAACATT GCGCGGCGAA
AACATTGCGC AGGAGTTTCA GGTGATTGTT GATGATTATG TGAAACAGAA CTACGCAGCA
AAAGTTGACT AA
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| Protein sequence | MSSNNSLPKL PLGPSPKRAT RQATVAWKTN VITVGGNAPV RVQSMTNTDT ADVIGTAIQV
KELARAGSEM VRITVDTPAA AAAVPYIREQ LDKMDVLVPL IGDFHYNGHT LLNDFPECAK
ALSKYRINPG NVGKGAKRDP QFAQMIEVAC KYDKPVRIGV NWGSLDQELL ASIMDSNAAL
ATPKTAQEVM IEALIQSALQ SAEKAVELGM NPDQILLSCK VSNVQDLVAV YRDLSRRSDY
PLHLGLTEAG MGSKGIVAST AAMGILLQEG IGDTIRVSLT PDPGAPRENE VIVAQEILQT
MGLRNFTPMV IACPGCGRTT STTFQELAAN IQSYLRQQMP VWKKTHPGVE EMNVAVMGCI
VNGPGESKHA NIGISLPGTG ETPAAPVFVD GVKVKTLRGE NIAQEFQVIV DDYVKQNYAA
KVD
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