| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1271 |
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| Symbol | |
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| ID | 5053248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1340426 |
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| End bp | 1342813 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640471442 |
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| Product | ribonuclease R |
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| Protein accession | YP_001156049 |
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| Protein GI | 145589452 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.142816 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAAAG CAAAAGACTT GATGCCGCGT GAGGCTGACC GATTAGGAAC AGTTCAGGGG
CATCGAGATG GATTTGGATT TGTTATTCCC GATGATGGTG GTGAAGATAT TTTTCTCTCC
GAGAGAGAAA TGTCACGCGT CATGCATGGC GATAGAGTCA ATGTCAGAGT ATTAGGAACA
GATCGACGAG GCCGTCCGGA AGGGCAAATT GTTGAGGTAG TTCTGCACGC TAACAAAGTG
GTGATCGGTC GTCTCTTAAA TGAGAATGGT GTATTAATTG TTGCGCCAGA GGATAAACGT
ATTGGCCACG ATATTTTGAT TCCACCTAAA GGCCAAGGTG TCGCCAAATT AGGGCAAGTA
GTTAGCGTTG AAATCATTGA TTACCCAGAT AGCTATCGCC AGGCGGTAGG TCGTGTAGTT
GAGGTTTTAG GTGAGATTGA TGATCCCGGA ATGGAAATCG AAATAGCGGT ACGTAAGTAT
GGCGTTCCTC ATGAATTCTC AGCAGCTGCC TTAAAAGAAG CGGCAGCATT GCCAGATACT
GTGCAGCAGG GGGACTTAGA GGGCCGCGTT GATTTACGCG ACGTACCTCT AGTGACGATT
GATGGAGCAG ATGCGCGTGA CTTTGATGAT GCCGTCTATT GCGAGCCAGT AATGTATGGG
CAAACTAAGG CTTGGCGTTT AATTGTCGCG ATTGCCGATG TTTCGCATTA CGTTAAGCCT
GGACAACCAT TGGATGACGA AGGCTTATTG CGTGCAACCT CCGTTTACTT CCCGCGCCGC
GTTATCCCGA TGCTCCCAGA AAAGATCTCC AATGGTCTTT GCTCTTTAAA TCCTGGGGTT
GATCGCCTTT GCATGGTCTG TGATTCTGTA GTGGACAACA ATGGCATCGT ATTGGCATAC
CAGTTCTATC CAGCAGTCAT GCATTCGGCT CAGCGCTTTA CCTATGACAC TGTTTGGGAA
ATTCTCTCCA ACAGTAAAGG GCCAGAGGCT ACGCGCTTTG CACAGTTCCG TCCTTTATTA
ACGAATCTAT ATTCTCTTTA CAAAATTTTA TTGGCTGCTC GTGAGAAGCG TGGCGCAATT
GAGTTTGAAA CGACTGAGAC CCAAATTATT AGCAACGAGC TTGGCAAGAT CTTACGTATT
GAGCCGCGCA TTCGTAATGA TGCACATCGC TTAATTGAAG AATGTATGTT GACTGCAAAC
GTTTGTGCAG CTGACTTTAT TGATAAGAAC AAGCATCTCA GTTTGTACCG TGTACACGGT
GAGCCTTCAG AAGAGAAGTT GGTGACTTTG CGTCAGGTGC TGAGAACTTC AGGCCTTTCT
CTAGGCGGTG GCGACAAACC AAAGCCGCGT GACTTTGCTA AATTGATTCG GGAGATTAAA
GATCGTCCGG ACGCCAATAT GCTGCAATCG GTTGTTCTAC GGGCAATGCA ACAGGCGATG
TACCAGCCAG ATAATGAAGG CCACTTTGGC TTGGCTTATC CCGCTTACTC ACATTTCACG
AGCCCAATTC GTCGCTACCC AGACTTGTTA ACTCATCGAG TCATCAAATC GATTCTGCAG
AAAAAGCCTT ATGTACCGGT CTTGCCGCCT AAGGTTCCGC TTAACCTTAC CTTGCCACGC
AAGGGTAAGG GTCGTGAGAA CGCAGTTAAT GCCAAGAAAT CTCAAAGCGA TGCAAAAGCT
GGTGCAGCAA AGGGTGTAAA AGTTCCCAAA GGCGCCAATG CCGCTTTACC AATTTGGGGT
CAGCTGGGCG TACATTGCTC ATCAAATGAG CGCCGTGCTG ATGAAGCATC GCGCGATGTC
GAGGCATGGT TGAAGTGCTA TTACATGCGC GATCATTTGG GTCAAGAGTA TTCCGGCACC
GTTACAGGTG TTGCCAATTT TGGATTATTC ATTCAGTTGG AAAATCTCTT TGTAGAAGGC
ATGGTTCACG TAACCGAGTT GGGTGGGGAC TACTTCCAAT ACGATGAGGC TCGTCAAGAA
TTGCGCGGTG AGCGTACAGG TATTCGTTAC CGCTTAGGTG ATCGCCTACA TGTATTGGTC
AGCCGGGTTG ATTTAGATGC GCGCAAAATT GAATTTAGTT TAGTTAAAAG TTTTGGCGCA
GAAGGGGGCG GTGGATCTTC TGGTCGACGT CAGGTGTTAT TAGCTGCCGA TACTGGTAGA
CCCAATAAGA AGGCTGCCCC CAATAAAAGT AGACCTGCCC ATAAAGCACC CCAAAAACCA
AGCGGCATTA ATGTGAATGC AGCTAAATCG GCGGGGACTT TGGGTGCCAA CCAATCCAAG
AGTCAGGCAA GTCGCAAGAG CAGCAAGGCT GCTAAGCCAA GTCGCCCTGT AGGCAAACCC
GCTGGTAGCA AGCCGCCTGT TCGCAGTACC AAAGCGCGCC GTAAATAA
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| Protein sequence | MRKAKDLMPR EADRLGTVQG HRDGFGFVIP DDGGEDIFLS EREMSRVMHG DRVNVRVLGT
DRRGRPEGQI VEVVLHANKV VIGRLLNENG VLIVAPEDKR IGHDILIPPK GQGVAKLGQV
VSVEIIDYPD SYRQAVGRVV EVLGEIDDPG MEIEIAVRKY GVPHEFSAAA LKEAAALPDT
VQQGDLEGRV DLRDVPLVTI DGADARDFDD AVYCEPVMYG QTKAWRLIVA IADVSHYVKP
GQPLDDEGLL RATSVYFPRR VIPMLPEKIS NGLCSLNPGV DRLCMVCDSV VDNNGIVLAY
QFYPAVMHSA QRFTYDTVWE ILSNSKGPEA TRFAQFRPLL TNLYSLYKIL LAAREKRGAI
EFETTETQII SNELGKILRI EPRIRNDAHR LIEECMLTAN VCAADFIDKN KHLSLYRVHG
EPSEEKLVTL RQVLRTSGLS LGGGDKPKPR DFAKLIREIK DRPDANMLQS VVLRAMQQAM
YQPDNEGHFG LAYPAYSHFT SPIRRYPDLL THRVIKSILQ KKPYVPVLPP KVPLNLTLPR
KGKGRENAVN AKKSQSDAKA GAAKGVKVPK GANAALPIWG QLGVHCSSNE RRADEASRDV
EAWLKCYYMR DHLGQEYSGT VTGVANFGLF IQLENLFVEG MVHVTELGGD YFQYDEARQE
LRGERTGIRY RLGDRLHVLV SRVDLDARKI EFSLVKSFGA EGGGGSSGRR QVLLAADTGR
PNKKAAPNKS RPAHKAPQKP SGINVNAAKS AGTLGANQSK SQASRKSSKA AKPSRPVGKP
AGSKPPVRST KARRK
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