| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1230 |
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| Symbol | |
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| ID | 5052877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1292072 |
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| End bp | 1293835 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640471402 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001156009 |
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| Protein GI | 145589412 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0560095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCT CCAACGAAAA CGATTCATCC CCGGTAGTAA ATCCATCGGC AACCCCATCC
CACGCGGACA CAACACCATC AAATTCTGAT GGTGCCAAGA CCGAAGGTGG AGAGCGTGGC
GAACGTCGCC CCCGTCGCCA AGGCGCGGGA GGCAGTAAAC ACCCGTTCAA TAAAAAGCGC
CCCTTTAACA AGGATCGGCC ACGTCGTGAG GGCGGTGAAG GTAATGGTCC ACGCGAAGGC
GGTCATAACC AGGGCAATAA CCAATCCTCC AAATTAGTCC CCAACCCGGC TGAGAGTGAA
GCCTTATTTG CTTCAGTGGT GTCCGGTGAA TTCGATGCCG CTTTAGATGC TCCTGAGGTT
GAGGAAGTAA AGAATCTTGA TGGTGTGAAT GAGAATGAAA TCTCTCATCA GACTGGTGCT
GAGCGTCGTG CGCAACGCGT GCGTCACGAT GAAGATGCTG ATATGCCAAG TGATGACGAG
ATGAGTAGCT TGCAATTTGC AAACGTCGAT GATCTTCCGC TGAGTTTGCG TGATGAAGTA
TGGTCAGACC TCGATGGTTT GGATGATGAT GCTGACGATG AAGATACTGT TAAGTTACAT
AAGGTTTTAG CGGATGTAGG CATGGGATCA CGTCGCGATA TGGAAGACTT GATTATTCAA
GGACGCGTAT CAGTCAACGG ATTGCCAGCG CATATTGGCC AACGCATTGG ACCAACAGAT
CAAGTGCGTA TTAATGGCAA GCCAGTACAT CGCAAGATTC AGACTAAGCC GCCGCGCGTG
ATTATGTATC ACAAGCCTGC TGGCGAAATC GTCAGCCAAT CAGATCCAGA AGGTCGTCCA
ACTGTATTTG ATCGTTTGCC AAAGCCACGT CAAGGCCGTT GGATCGCAGT AGGTCGCTTG
GACTTTAATA CCGAAGGTTT GTTGCTGTTC ACCACCTCTG GTGAGTTGGC CAATCGTTTG
ATGCATCCGC GATATGGTGT TGAGCGTGAA TACGCTGTGC GCATTCTGGG TGACTTGAGT
CAAGAAAACA CAGCACTATT AAAGAGCGGT ATTACGCTCG ATGATGGCCA GGCTAAATTC
CTGCGTCTAG CCATGGGTGG TGGTGAGGGC GCTAACCGCT GGTACCACGT TGCATTAAGC
GAAGGCCGTA ATCGCGAAGT GCGTCGTATG TTTGAAGCCG TTGGTCATAC AGTATCTCGT
TTAATCCGAA CTCGTTATGG CATTTTCTTA TTGCCTCCAC GTTTACGTCG TGGCAAATGG
GAAGAGATTG AGGCTGGCGG CATTTACAAC TTGATGAAGT CTGCAGGCCT AAAAATGCCA
CAACCGTCAG ACAAGGGTCG TAGCCCCAAT CCAAATAATC GTGATCGTCG CCCCGCAGGT
GAGGATTTCC AGCCGGATCC AATGCAAACC TCAGTTTCTT ACTGGGGTTC GCGTGACGCC
TTAACCCTTG CTAGCGGCCA TAACGGTCTC ACGCATCAAA GCAGGGGCGG TAAACCAGGT
GGCGGCGGTG CTGCTAGCGA AGGGCGCGGT CCTTTCCGGG GCCGTACTCA GGGTGGCAGG
CCAGGACAAG GTGCTGGCCA AGGCGGTCAG GGTGGCCAAG GTCAAAATCG CAATAAGGCC
AAAAAGGTGC ATCATGGCCA GTCTGCTTTT GTGACTGGAA ACCCTCAAAC ACCGGGTAAT
GGCCCTAAAC GAAGCGCCCC CAAAGGGAGA AAACCCTTCA ATAAAGGCCC TAGAAAGCCC
CGTAATCCTG GCGAAAGCTT CTGA
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| Protein sequence | MTSSNENDSS PVVNPSATPS HADTTPSNSD GAKTEGGERG ERRPRRQGAG GSKHPFNKKR
PFNKDRPRRE GGEGNGPREG GHNQGNNQSS KLVPNPAESE ALFASVVSGE FDAALDAPEV
EEVKNLDGVN ENEISHQTGA ERRAQRVRHD EDADMPSDDE MSSLQFANVD DLPLSLRDEV
WSDLDGLDDD ADDEDTVKLH KVLADVGMGS RRDMEDLIIQ GRVSVNGLPA HIGQRIGPTD
QVRINGKPVH RKIQTKPPRV IMYHKPAGEI VSQSDPEGRP TVFDRLPKPR QGRWIAVGRL
DFNTEGLLLF TTSGELANRL MHPRYGVERE YAVRILGDLS QENTALLKSG ITLDDGQAKF
LRLAMGGGEG ANRWYHVALS EGRNREVRRM FEAVGHTVSR LIRTRYGIFL LPPRLRRGKW
EEIEAGGIYN LMKSAGLKMP QPSDKGRSPN PNNRDRRPAG EDFQPDPMQT SVSYWGSRDA
LTLASGHNGL THQSRGGKPG GGGAASEGRG PFRGRTQGGR PGQGAGQGGQ GGQGQNRNKA
KKVHHGQSAF VTGNPQTPGN GPKRSAPKGR KPFNKGPRKP RNPGESF
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