| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1225 |
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| Symbol | |
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| ID | 5053218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1285853 |
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| End bp | 1286761 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471397 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001156004 |
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| Protein GI | 145589407 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.886706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACGC GTATCGATGG CGTAGTGTTG CTGGATAAAC CCGCCGGAAT GAGTTCCCAA
GGTGCGGTTA CTGCAGTCAA ACGCGCCTTC AATGCTGACA AGGCTGGTCA TACAGGTACT
TTAGATCCTA TGGCGACTGG CTTGCTGCCC ATTTGCTTGG GTGAGGCTAC TAAGTATTCT
CAGGACTTAT TAGAAGCCGA TAAGACTTAT ATTGCTCAAG TGAAATTCGG CTCGCGTACT
GATACAGGTG ATGCAGAGGG TCTCATAATT GAAGAGCTTC CATTACCCGC ATTTGAAAAT
GATGCGGCAT TGCTGAAATT ATTGGAATCC TTATTGCCAA AGTTTACTGG CCTAATCTCT
CAAGTGCCCC CAATGTATTC CGCTTTAAAG CGAGATGGCA AACCTTTATA TGAGTACGCA
CGTGCTGGTG TGGAGTTAGA GCGTGCGCCA CGTGATATCA CCATCCATAA AATTCGTTGG
ACGAATGTTC AATGGCCAGA GGCTACATTA GAAGTAAGCT GTAGTAAGGG TACTTATATT
CGTGTTTTGG CTGAAGATCT TGGTAATGCT TTAGGTTGTG GCGCACATTT AGTGGGCTTA
CGCCGAACTG AAGTAGGGCA TTTAACCTTG GATCAATCTT TCACAATTGA ATCGATTCAA
AATGGCGGAA AAGATAGTTC TAGTTATATC TTGCCGGTAG ATGCTTTATT GCAGACCTTG
CCTCATCTAA CAGTTGATGA GCAACAGGCA AAACGTTTGG AAATGGGTCA GCGGGTACCG
TTAAACCTTC CCTCCATTGA AGCTTTAGTG CGTATTTATC GCGCTACTGC TGCACCCCAT
AACTTTATTG GTACTGCGGA TTGGCGCTCG GGAGTATTAC ATCCCAAGCG CTTGATTTCT
CAGGCTTAG
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| Protein sequence | MSTRIDGVVL LDKPAGMSSQ GAVTAVKRAF NADKAGHTGT LDPMATGLLP ICLGEATKYS
QDLLEADKTY IAQVKFGSRT DTGDAEGLII EELPLPAFEN DAALLKLLES LLPKFTGLIS
QVPPMYSALK RDGKPLYEYA RAGVELERAP RDITIHKIRW TNVQWPEATL EVSCSKGTYI
RVLAEDLGNA LGCGAHLVGL RRTEVGHLTL DQSFTIESIQ NGGKDSSSYI LPVDALLQTL
PHLTVDEQQA KRLEMGQRVP LNLPSIEALV RIYRATAAPH NFIGTADWRS GVLHPKRLIS
QA
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