Gene Pnuc_1224 details

Gene Information

• Locus tag: Pnuc_1224
• ID: 5053220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: -
• Start bp: 1283969
• End bp: 1285786
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640471396
• Product: GTP-binding protein TypA
• Protein accession: YP_001156003
• Protein GI: 145589406
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTAAAC GCGCACTTCG TAACATCGCT ATCATCGCCC ACGTTGACCA CGGTAAAACA 
ACATTGGTTG ACCAACTCTT GCGCCAATCA GGCACATTCC GCTCGAATGA AAAAATGACC 
GAACGTGTCA TGGACTCAAA TGACTTGGAA AAAGAACGTG GTATTACTAT TTTGTCCAAG 
AACTGTGCAG TCGAATACGA CGGCACACAT ATCAATATCG TAGACACACC GGGACACGCC 
GACTTCGGTG GCGAAGTAGA GCGTGTGCTC TCTATGGTTG ACGGTGTTTT GCTCTTGGTT 
GATGCAGTTG AAGGCCCAAT GCCACAAACT CGTTTTGTAA CCAAGAAAGC ACTGGCTCTT 
GGTTTGAAGC CAATTGTTGT AATCAACAAG GTAGACCGTC CAGGCGCACG TTGTGATTAC 
GTAATTAATG CCACTTTTGA ATTGTTTGAC AAGTTGGGAG CTACGGAAGA GCAGTTAGAC 
TTCCCGATCA TCTACGCTTC AGGTTTGAAC GGCTATGCTG GCTTGACGGA AGATGTTCGC 
GAAGGTGATA TGCGTCCATT ATTCGATGCT GTTTTAGAGC ATGTACCTGT CCGTGATGAT 
GATCCAGATG GTCCTTTGCA ATTTCAGATT TCCTCAATCG ATTACAACAG CTATGTTGGT 
AAGATTGGTG TTGGCCGTAT TAGTCGTGGC CGAGTCAAGT CAGGCATGGA AGTAGTATGT 
ATGAATGGCC CTGATGGTGT GCCATTTAAA GGCCGTATTA ACCAAGTATT GAAATTTAAA 
GGTCTTGAGC GTGAAATCGT TGATGAGGCA GTTGCTGGCG ATATCGCATT GATTAATGGT 
ATTGAAGAGT TAGCGATTGG TACTACTGTT TGTGCAGTGG ATAAACCTGA TCCATTGCCA 
ATGCTGAAGA TTGATGAGCC TACTTTGACC ATGAACTTTA TGGTAAATAC GAGCCCATTG 
GCTGGTCGTG AAGGCAAGTT TGTGACTAGC CGCCAGATTC GTGAACGTCT TGATCGTGAA 
TTGAAGGCCA ATATGGCTTT GCGCGTTCGC GAGACTGATG ACGATACCGT ATTCGAAGTT 
TCTGGTCGTG GTGAGTTGCA TTTGACGATT TTGGTTGAAA CGATGCGTCG TGAAGGCTAT 
GAGATGGCGG TTTCCCGTCC ACGCGTAGTA TTCCACGAAG AGAATGGTGT CAAGATGGAG 
CCGTATGAGA ACTTAACGGT TGACGTCGAA GATGCTACTC AAGGTTCCGT AATGGAGGAC 
TTAGGTAAGC GTAAGGGTGA ATTACAAGAC ATGGTGAGTG ACGGCAAAGG TCGTACCCGT 
CTTGAGTACC GTATTCCTGC ACGTGGCCTG ATTGGCTTCC AAGGCGATTT CATGACTATG 
ACTCGGGGTA ACGGTTTAAT GAGTCATACA TTTGATTCTT ATGCGCCTGC AAAAGATGGC 
ATCTTGGGTG AGCGTCATAA CGGCGTATTG ATCAGTCAAG ATGATGGCGA GGCAGTTGCT 
TACGCTATTT GGAAGTTGCA AGATCGTGGT CGTATGTTCG TAAAACATGG TGATCCTGTT 
TACGAAGGCA TGGTGATTGG TATTCATAGT CGTGACAACG ACTTAGTTGT GAATCCGATT 
AAGGGTAAGC AATTAACTAA CGTACGTTCT TCAGGTACTG ACGAAGCAGT TCGCTTGGTA 
ACACCAATTG ATTTGACTTT GGAGTATGCA GTTGAATTCA TTAGCGATGA TGAATTGGTT 
GAAGTCACGC CAAAAAGCGT ACGGATTCGT AAGCGCCACC TCAAGGAGCA TGATCGTAAG 
AAGGCTTCCC GCGAGTAA 

 

Protein sequence

MTKRALRNIA IIAHVDHGKT TLVDQLLRQS GTFRSNEKMT ERVMDSNDLE KERGITILSK 
NCAVEYDGTH INIVDTPGHA DFGGEVERVL SMVDGVLLLV DAVEGPMPQT RFVTKKALAL 
GLKPIVVINK VDRPGARCDY VINATFELFD KLGATEEQLD FPIIYASGLN GYAGLTEDVR 
EGDMRPLFDA VLEHVPVRDD DPDGPLQFQI SSIDYNSYVG KIGVGRISRG RVKSGMEVVC 
MNGPDGVPFK GRINQVLKFK GLEREIVDEA VAGDIALING IEELAIGTTV CAVDKPDPLP 
MLKIDEPTLT MNFMVNTSPL AGREGKFVTS RQIRERLDRE LKANMALRVR ETDDDTVFEV 
SGRGELHLTI LVETMRREGY EMAVSRPRVV FHEENGVKME PYENLTVDVE DATQGSVMED 
LGKRKGELQD MVSDGKGRTR LEYRIPARGL IGFQGDFMTM TRGNGLMSHT FDSYAPAKDG 
ILGERHNGVL ISQDDGEAVA YAIWKLQDRG RMFVKHGDPV YEGMVIGIHS RDNDLVVNPI 
KGKQLTNVRS SGTDEAVRLV TPIDLTLEYA VEFISDDELV EVTPKSVRIR KRHLKEHDRK 
KASRE