Gene Pnuc_1221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1221 
Symbol 
ID5053974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1279460 
End bp1280287 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content41% 
IMG OID640471393 
Producthypothetical protein 
Protein accessionYP_001156000 
Protein GI145589403 
COG category[I] Lipid transport and metabolism 
COG ID[COG3000] Sterol desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.31242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAAT TTCTTAACAA TAAGCAGCTC CTCATTTTCT TGCCGGTGGT TGCATTGGCA 
ATCATTCTTG AATCGCTGAT TTATAAATGG CGTTATAAGA AATCTTACCC ATGGATTGAG 
AGTGCGACTT CACTAGGGGT TGGCCTTGGA CATCAAATAA CAGGGATCAT TAATCGTTTA 
TTGATTCAAG GGCTGATGGC TAGTTTTATT TGGCAGTACC GATTGTTTAC TGTGCCCGAT 
GAGTGGTGGA CATACCCTGC GTTATTTATA GGCCTAGAAT TTTGTTACTA CTGGTATCAC 
CGGGCTTCAC ATGAAGTCTT TTTAATGTGG GCTACGCATA GCACTCATCA TTCTCCCAAT 
GAAATGACGC TTTCTGCTGC CTATCGCTTA GGTTGGTTGC CATTTCTGTC TTTTACTTGG 
ATATTTTTCT TTCCCCTAGT CTTAATTGGG TTCTCACCTG TAGCGGTATT TACGGCACTT 
TCTCTCAATT TAATGTATCA GTTTTGGCTG CATACCAAGT TGATTCCAAG TTTAGGATTT 
TTAGAGGGCA TTATTAATAC CCCGTCGGCT CACCGTGTGC ACCATGCAAG TAACCCCATG 
TATCTCGATA AGAATTATGG TGGAGTTCTG GTTATATTTG ACAGAATGTT TGGAACCTAT 
ATAGCTGAAG ATCCCAATAC AGAAATTGTC TATGGACTGA CACATCCGAA CTACTCAAAG 
AATCCTGTGA ATGTAGTCTT TAAGGTTTGG AAGGACTTGA TAAGAGGAGT CATTCAAAAG 
CCGACACTGC GTGAGAAGTT AAAGCTGATC TTCTCTCCAC CCCAATAA
 
Protein sequence
MEQFLNNKQL LIFLPVVALA IILESLIYKW RYKKSYPWIE SATSLGVGLG HQITGIINRL 
LIQGLMASFI WQYRLFTVPD EWWTYPALFI GLEFCYYWYH RASHEVFLMW ATHSTHHSPN 
EMTLSAAYRL GWLPFLSFTW IFFFPLVLIG FSPVAVFTAL SLNLMYQFWL HTKLIPSLGF 
LEGIINTPSA HRVHHASNPM YLDKNYGGVL VIFDRMFGTY IAEDPNTEIV YGLTHPNYSK 
NPVNVVFKVW KDLIRGVIQK PTLREKLKLI FSPPQ