Gene Pnuc_1220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1220 
Symbol 
ID5053911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1278531 
End bp1279454 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content47% 
IMG OID640471392 
Producttransglutaminase domain-containing protein 
Protein accessionYP_001155999 
Protein GI145589402 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1305] Transglutaminase-like enzymes, putative cysteine proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.826592 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTAG AAATTACTCA CGATACTCAT TACTCTTACG ATCCTAACGT AGAGGTTGCA 
CAACATTTTG CCCACCTCAA GCCGGCGTCA CAAAAATCAC AGCAGGTTTT AAAAACACGG
CTCTTGATCT ACCCCAACCC TGCCTGGAGC GATGAAAGCC TGGATGATTA TGGGAATGTG
CGCACTTTTT TCTCTCTGCA AAATAGACAT AGCGAACTTC GAATTACAGC CAAGTCATTG
ATACAGACAA ATGAAAACGT GCAGATGGGG CCCGATCCCG AAAATACCCC ACCCTGGGAG
TCTGTACGCG AATACTTTCG CTATCACTCG AATACTCAGT GGGACGCGGC TTCCGAATTT
TTATTTACCT CCCCTTTTAT TGCCCTACGT GCAGAGTTTG CCGAATTTGC GAGAGCAAAC
TTTACCAGCG GAAGGCCAAT CTTAGAGGCT GCAATAGATC TGACTCAGCG CATCTATGGT
GAATTTCACT ATGTCAGTAA GAGTACTGAT ATTGGCACAC CAGCACTTGA GGCATTAAAT
AAACGGCAAG GGGTATGCCA GGATTTTGCA CATATTTTGA TTGCCTCATT GCGTAGCATT
GGGCTTCCAG CAAAATATAT CAGTGGTTAC ATCCTCACAA ACCCACCACC CGGACAGGCG
CGCCTGATTG GCGGTGATGC ATCCCATGCG TGGGCATCTA TTTATATCCC AAGCATTAAT
GAAGATGGGC AGCTGTCAGA GGGAATGTGG TGCGACCTAG ATCCAACCAA TAATCGCTGG
GGTTATGAAA CCCCTGGTGA TGATTATGTC CATTTAGCTC AGGGAAGGGA CTATGCCGAT
GTCTCCCCTA TTCGCGGCGT GATCCATGGT GGCGCTGATC ACACATTGGA TGTCGCTGTG
ACTGTAATGC CAATTGAGCA ATAG
 
Protein sequence
MLLEITHDTH YSYDPNVEVA QHFAHLKPAS QKSQQVLKTR LLIYPNPAWS DESLDDYGNV 
RTFFSLQNRH SELRITAKSL IQTNENVQMG PDPENTPPWE SVREYFRYHS NTQWDAASEF
LFTSPFIALR AEFAEFARAN FTSGRPILEA AIDLTQRIYG EFHYVSKSTD IGTPALEALN
KRQGVCQDFA HILIASLRSI GLPAKYISGY ILTNPPPGQA RLIGGDASHA WASIYIPSIN
EDGQLSEGMW CDLDPTNNRW GYETPGDDYV HLAQGRDYAD VSPIRGVIHG GADHTLDVAV
TVMPIEQ