Gene Pnuc_1185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1185 
Symbol 
ID5052771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1244124 
End bp1245119 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content45% 
IMG OID640471358 
ProductABC transporter, substrate binding protein 
Protein accessionYP_001155965 
Protein GI145589368 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.987715 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTCAA AAAAATTCTC TAGACGCGAC ACACTGGTGC TCGGCATCAA ATCTAGCCTT 
GCCTTGGCCA TGGGATCTAT CGGCCTAAGT GCAAAAGCAC AAGAAAAGAA GTTATTAATT
GGATATTGGC CCATTGCAGC CGGCCTACCT TTTTATGCTG CCGTCGATCG TGGTCTCTTC
AAACAAGCAG GAGTAAATGT AGAGGCCGTG AAGTTTGCAA GCCCAAATCA GGTAGTAGAG
GCCATGATTG CAGGCAGGAT TGATGGTTGC GCAAACGGGG TAGCTATCAC AGCACTCGCA
TTAGCTGATG CACAATCACC GGGTTCCATT AAATTCACTT GCATGAACTA CGCAAACGAA
AAATATATCC TGGACCAGGT TATCGTTCCA ATTAACTCCA GTATTAAGGG GATTTCTGAG
CTTGCCGGGA AAAAAGTTGC CTGTGGTCCC GGAATCAATA ATGTCACCCT CGCTAAGGCA
GTGCTAGCAG GCGCGGGAGC GACTAATGCT CAAGTCATTG AGTTGCCTAT CGCCCAAATC
CTACCGGCCT TAGTGGCCGG TCAAATTGAT GGGGCCTATG TACTAGAGCC AACTGCAGTC
ATTGGAAAAC AACAAAAAAT CTCACGCTCA ATTGGCGCAG GAGTGGTATC AAAATATGTT
TTAGGCGATA ACCTTCCTTG GATAGGCGGC GCAGCTGCAC TCACCTCTAA GACGCTAAAA
GAAAAAGCGG ACTTAATTAA TGGATTTATT AAAGGGTATG CAGGGGGCGT TGAGTATGTT
CGCAAAGAGG GTATGGCTGC CAATCAATAT CTAAAAGGCT ATACAGCGAT TGACGGCGAT
TTAGCCAAAG AGGTGCCAAT TAGCGGATAC ATCCAATATA ACGAAGTGAA AGCTGCTGAT
GTAAAGGCAT TGCAACGACT ATTTGATGTA TTTACCGAGC GTAAAGTTTT TGAAAAACCT
ATATCGGCAC TAACACTTAT CTACAAGCAG TCCTAA
 
Protein sequence
MNSKKFSRRD TLVLGIKSSL ALAMGSIGLS AKAQEKKLLI GYWPIAAGLP FYAAVDRGLF 
KQAGVNVEAV KFASPNQVVE AMIAGRIDGC ANGVAITALA LADAQSPGSI KFTCMNYANE
KYILDQVIVP INSSIKGISE LAGKKVACGP GINNVTLAKA VLAGAGATNA QVIELPIAQI
LPALVAGQID GAYVLEPTAV IGKQQKISRS IGAGVVSKYV LGDNLPWIGG AAALTSKTLK
EKADLINGFI KGYAGGVEYV RKEGMAANQY LKGYTAIDGD LAKEVPISGY IQYNEVKAAD
VKALQRLFDV FTERKVFEKP ISALTLIYKQ S