Gene Pnuc_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1154 
Symbol 
ID5052134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1208796 
End bp1209581 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content48% 
IMG OID640471326 
Productputative cytochrome c 
Protein accessionYP_001155934 
Protein GI145589337 
COG category[C] Energy production and conversion 
COG ID[COG3258] Cytochrome c 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.689886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGCAAT CGTTTTACCT CAAACTCCTC ATTGGGATCT TTCAGCTTAG TCTTAGTGCT 
ATCGTTTTAG CAGGCACGCA GGCCGAGGTA AAAAAACCTC AATCCAGCTA TGAACTGATG 
TCTGCTGAAA ATAAGGCCAT GCAAGATGAC CCTAGCCTTA ACCCAGCAAT GTTTTGGCTC 
GGTGATGGTG AGGCTTTGTG GAATGCTCCC ACTGGTCAAA AAAATATCTC CTGCGCAAGC 
TGCCACGGTG ACGCAAAAAA ATCGATGCGG GGCATAGCTA CTCATTTTCC AAAGGTCATG 
GGTTCTAAGC TGCAGACATT GGAGGGGCAA ATCAATCAAT GCCGTGTTGG TGCACAACAG 
GCGCCAGTCC TCATCTATGA GAGTAAGGAA CTGCTGTCGC TGACTGCTTA TATTGCAAAT 
CAGTCAAAGG GCATGCCGAT AGTAGTTAAA GAAACCGCGC AAAACAAAGT TGACTTGAAA 
AAAGGTCATG ATTATTTTTA CGAGAGAATG GGTCAACTCA ATTTATCGTG CGCTCAATGT 
CATGAAGACA GGGCTGGTCT GAAGTTGGGA GGTAGCCCCA TACCGCAAGG CCATCCCAAT 
GCCTATCCTA TTTATCGCCT GGAATGGCAG ACTTTGGGGT CTTTGCAGCG CCGCCTGCGC 
AATTGCATGA GCGGAGTAAG GGCTAAGCAG TTTGAATATG GTTCACCAGA GATGGCCCAG 
CTCGAATTAT TTCTCGCGTG GCGAGCGCGA GGACTACCCC TAGAATCTCC AGGGGTGAGG 
CCTTAA
 
Protein sequence
MRQSFYLKLL IGIFQLSLSA IVLAGTQAEV KKPQSSYELM SAENKAMQDD PSLNPAMFWL 
GDGEALWNAP TGQKNISCAS CHGDAKKSMR GIATHFPKVM GSKLQTLEGQ INQCRVGAQQ 
APVLIYESKE LLSLTAYIAN QSKGMPIVVK ETAQNKVDLK KGHDYFYERM GQLNLSCAQC 
HEDRAGLKLG GSPIPQGHPN AYPIYRLEWQ TLGSLQRRLR NCMSGVRAKQ FEYGSPEMAQ 
LELFLAWRAR GLPLESPGVR P