Gene Pnuc_1111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1111 
Symbol 
ID5052135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1156294 
End bp1158714 
Gene Length2421 bp 
Protein Length806 aa 
Translation table11 
GC content45% 
IMG OID640471281 
Producthypothetical protein 
Protein accessionYP_001155891 
Protein GI145589294 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.685916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTCCA TTAGAAATCA CCGTTTTCAG GTTTGGGGTT TGCGCATTGC AGCTACCTTC 
CTCATCTTGG CCTTCCTTTT CTGGGCAGGC TGCCATATTT TTGTGCCCGG CTTAATTAAA
AAGTCAGTAA CTGAGTATGG CCAGAGACTT GGCTATGAGA TCGCCTATCA AGATTTAACC
CTATCTCCAT TACGCCTACA GATTGAGCTT AATGACCTCC ACTTATCAAA AGAGGGGGGT
AATACACTTC TGGAGTTTAA AAAGCTGCTT GTTTCGCTGA AGTGGACAAA GCTGGTTAAA
GGAGAGCTTG GCTTTGATCA AATCCTCTTG GATGAACCCA AGTTACTGGT GGAGAAAAAA
CTAAATACCT GGAATTGGCA AGAGTTTGCT TATGCGATCG AAAAGAATTT ACCCCCAGCG
GATCCGAAAG CTCCCAGCAA GCCTATCAAG ATTTCTGTTG GTAAATTTTT AGTGAGCAGT
GCTTCGCTAG CGTTAGTAGA TCAGTCATTA AAACTAAAAG AAGAGCTCAA ACCATTTACC
GTTGAATTGC TCGATGTTGC GAATTACGAT AAGGAGGGAG ATGTGTCTGG CGTGCGCGGA
CGGTATGACT TGAATTTAGG TGCGCTACAG TTACTGATTC CAGGCATCAA TAAAACGATT
GGCTTTCACC ACATTAGCCT TGGTGGTGGA TTAGATAATC CAAGCCCAAA TAATTTAGGC
GTTCAATTGG ATTTGAAGCT AGATGATGGA CAAATACTCT CTCATTGGGA CCTCAATACC
ATCTCAAAAG AGATTTCTGG AAAATTGAAG TTAGAGAATA TTGCTACCGC TCCTTTTATT
GCATTACTTC CAGCTAATAA GGAGTTGTTA GGCAGCAGTG GGGTAATGAA TGCGGATATA
GGGGTTACTC TTGGTGGTGA TTCTGATCGG ATCGCTGGAG ATCTTCATTT ATCCAATCTG
GCTGTAATTG AGAAAGGTGA AAAAACACCT TTAATTACTT GGGATGCCGC AGACGTTCGC
CAGTTTGAAT ATAAAAGTAG CAAGCAAGCT AATGATCATT CTAATAGTAG CTTGACCATT
GATGAGCTCA TCATCGACCA CCCGAGCTTG CGTTTTGACA TCAACGATCA AGGCATGTCA
AATTTCAGGC GCTTATTCTC AAAGCCTGCA GCAGATGCAG CAAGCCCTGA AAATGCACCT
TTAGTTAATA AAACAGCATC CCCAGAATTT AAAAATACAT TTGGGTTGGA TATCAAAACA
CTTGGTATGA AAAATGGCGA AGTCTTTTTT ACTGATCTTG CCATGCGCCC CAATTTCAAA
GTGGACATTA AAAAATTTAA TGCCACCCTA ATAGGCGTTA GTAATGCACC CGGCCATTTT
GCAACGGTTG CCATGGATGG TGTAGTAGCA AACTCCGGAA GTATGAGGGC CAAAGGACAG
GCCTCATTCG ATGATCCGCG CCGTAATCAT GACATCTTGA TGACCTTCCG TAATTTGCCG
CTAACGACTT TTAACCCTGC GGTGATGACC TATGCTGGCT ATCAAATTAG CGGGGGTCAT
CTGAGTCTCA ATCTCAATTA CCGAGCCAAA GACGGGCAGT TAACTGGTAG CAATCAGATC
ATCATTAAGG GTGTTCAGCT AGGTGATGAG GTACCCGATT ACCAGGGCAA AAAATTACCC
CTTGGTCTTG CAATTGCACT GCTTGAAGAC TCTGATGACA CCATTGATGT CACTATCTGT
ATTGCCGGTA ACGTTGATTC ACCTGAGTTC AGTGCGAGTG GCTTGGTATG GCAAGCGATT
AGTAATGTAC TCAGTAATGT CGCCACAGCC CCATTTAGGG CTTTAGGATC CATCATGGGT
ATGGGAGGTG AGAATGGCAT CAATGCCGTC CTTGGTGAGG CTGTGTTTTT ACCTGCTGAC
CAAGATCGCC TTGAAAAGTT CGGTGAATAC TTGGATAAGC ATCCCAATTC CAAGCTTGAG
CTTATTGGCA CCTATGATCC AGTGCAAGAC AAACAGGAGT TGGCGCGTGT GAAGGCAGAT
ACAGCCATTC TGAAAGATGC CGGCTTCAAA CTTGAACCTG GTGAGCCCAT CCCAGCGCCT
AGCTTGACTG ATCCTCGCAT TCAGTCGGGT TTAAGGACAG CTTATGCGCA ATACGTTGGC
CGTATCAAGC TTGGGCAACG CTTATTGATG CTTCCAGAGG GCGAAGCTCG CAATGACCAG
CTTCACACAG AGTTAATTGC CGCTATCGAC ATTAGTGAAG ACGAACTAAG GCAGTTGGCA
AAAAACCGTG CCCAACTCGC TTTTAGTTTG ATGACTACCG AGAATCCCGG CCTGAAGGAT
CGTATTAATT TTGGCGATAT TAAAACTGTA GAGGCAGGCA AAGAGGGCGT CCCTCTCGAT
GTTGAGCTCA GAATCAAGTA G
 
Protein sequence
MLSIRNHRFQ VWGLRIAATF LILAFLFWAG CHIFVPGLIK KSVTEYGQRL GYEIAYQDLT 
LSPLRLQIEL NDLHLSKEGG NTLLEFKKLL VSLKWTKLVK GELGFDQILL DEPKLLVEKK
LNTWNWQEFA YAIEKNLPPA DPKAPSKPIK ISVGKFLVSS ASLALVDQSL KLKEELKPFT
VELLDVANYD KEGDVSGVRG RYDLNLGALQ LLIPGINKTI GFHHISLGGG LDNPSPNNLG
VQLDLKLDDG QILSHWDLNT ISKEISGKLK LENIATAPFI ALLPANKELL GSSGVMNADI
GVTLGGDSDR IAGDLHLSNL AVIEKGEKTP LITWDAADVR QFEYKSSKQA NDHSNSSLTI
DELIIDHPSL RFDINDQGMS NFRRLFSKPA ADAASPENAP LVNKTASPEF KNTFGLDIKT
LGMKNGEVFF TDLAMRPNFK VDIKKFNATL IGVSNAPGHF ATVAMDGVVA NSGSMRAKGQ
ASFDDPRRNH DILMTFRNLP LTTFNPAVMT YAGYQISGGH LSLNLNYRAK DGQLTGSNQI
IIKGVQLGDE VPDYQGKKLP LGLAIALLED SDDTIDVTIC IAGNVDSPEF SASGLVWQAI
SNVLSNVATA PFRALGSIMG MGGENGINAV LGEAVFLPAD QDRLEKFGEY LDKHPNSKLE
LIGTYDPVQD KQELARVKAD TAILKDAGFK LEPGEPIPAP SLTDPRIQSG LRTAYAQYVG
RIKLGQRLLM LPEGEARNDQ LHTELIAAID ISEDELRQLA KNRAQLAFSL MTTENPGLKD
RINFGDIKTV EAGKEGVPLD VELRIK