| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1105 |
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| Symbol | |
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| ID | 5053770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1147073 |
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| End bp | 1148452 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640471275 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001155885 |
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| Protein GI | 145589288 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAGCT TTAAAGAAGA TTTTACTGAG CACATATCTG CTGTTTATCA GACCTTGTCT
GATGAGCTGA AGAGCTGGTT TGAGTTCCTT CGTGAAATCT GGCCCCTTCT TGTTCTGCTC
CTCGCTGGCT TATCAATATT AATTTGGTTT GCTAAGCCTG CGCCACCCAA AAAAGTCATG
ATGGCCACTG GCGCTGGCGG CTCTTACAAT ATCTTGGGCG AAAAATATCA AGCTTACTTC
AAGAAAAAAG GCATCGAGCT AGAGTTGGTC CAAACCAAAG GTTCAGATGA AAATCTTCAG
CATTTAATTG ATCGTAAGGA TCCAATTCAG ATTGCTTTAG TACAGGGCGG GATGATTGCC
CGAGAGGGGC TTAGTGGTGT GCAGTCATTA GGTAGTGTTG ACTACGAGCC TGTGTGGTTA
TTCTATCGAA ATAAAGCTTT TGACAACACC AGCCATATCC TTGACCGGGA CATCATCAAG
TTAAAAATTG GTATTGGTCC AGTTGGTAGT GGTACTCATA CCCAGGCAAT CAATATCTTG
AAGCTGAATA ATCTATCAAG TGATACCCCC AATCTCATCC CCTTATCGAA TCATGATGGG
GTTAAAGCCC TTCAGCGAGG TGAGTTAGAT GCCTTGTTGC TAGTAGATGG TTTTACTTCG
GTGAATGTTC AAACCCTCAT TAAAGATCCG ACTATTCATT TAACTTCTTT TAATCGAGCA
GACGCCTATA CGCGTCTAGT GCCTTATTTT GAGGAGGTCA TGGTACCCAT GGGTGGCTTT
GATCTAGGGA TAAATGACCC AGATCACCCC ATTAAATTGT TATCTACCAC TACAAACCTA
TTAATTGATG ATCGCTTGCA CCCAGCTATT CAACTACTGC TTTTAGAGGC TGCTAAAGAG
ATTAATGGAG AGAAGAGTTA CTTTGCTAAT GCTGGTCAGT TCCCGTCCTA TATGAACTCT
GAAGCGCCCT TAAGTGAAGA GGCCAAGTAT TTTTACCAAA AGGGTACGCC GGTGCTAATG
AAGTATCTGC CATTTTGGAT GGCAGAGTTT CTAGAGCGGA TGTTCTTGCT CTTGGTGCCT
TTTGCAGCGT TCGCTTATCC CATCATCAAA TCGATACCAA ACTATCGCGT GAACTTAGCC
CGCAAACAAA TTAATAATAT TTACAAAGAA CTAGATAAGT TTGAGCATGA AATTATTGAA
AATTATGAGC CAAGTAAACG TGATTTGTAT CTGGCAATCT TGGATGAGAT GGAGCGAAGG
GTGTTGATAA GTAAGGCTGC CAAGCTAGCA ACAGTAGATT GCTATACCCT AAGAAATAAT
ATTAATTTCA TCCGCAATTC TTTAGGCAAA GAATCTATTT ACCACTCAAG ACCAGCTTAA
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| Protein sequence | MASFKEDFTE HISAVYQTLS DELKSWFEFL REIWPLLVLL LAGLSILIWF AKPAPPKKVM
MATGAGGSYN ILGEKYQAYF KKKGIELELV QTKGSDENLQ HLIDRKDPIQ IALVQGGMIA
REGLSGVQSL GSVDYEPVWL FYRNKAFDNT SHILDRDIIK LKIGIGPVGS GTHTQAINIL
KLNNLSSDTP NLIPLSNHDG VKALQRGELD ALLLVDGFTS VNVQTLIKDP TIHLTSFNRA
DAYTRLVPYF EEVMVPMGGF DLGINDPDHP IKLLSTTTNL LIDDRLHPAI QLLLLEAAKE
INGEKSYFAN AGQFPSYMNS EAPLSEEAKY FYQKGTPVLM KYLPFWMAEF LERMFLLLVP
FAAFAYPIIK SIPNYRVNLA RKQINNIYKE LDKFEHEIIE NYEPSKRDLY LAILDEMERR
VLISKAAKLA TVDCYTLRNN INFIRNSLGK ESIYHSRPA
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