Gene Pnuc_1101 details

Gene Information

• Locus tag: Pnuc_1101
• ID: 5052037
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 1143478
• End bp: 1144140
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640471271
• Product: hypothetical protein
• Protein accession: YP_001155881
• Protein GI: 145589284
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1664] Integral membrane protein CcmA involved in cell shape determination

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAATA ACCAAAATCC TTCCCGCCAA TCAGACCAAG GCATTGATGA AGACAACGTC 
CTTTTATTGG GCAAAAACTT CAATATCGTT GGTGACCTCA TTGGCCAAGG TACTGTGATT 
GTTTCAGGTA GGGTTGAGGG CAATATTTCC TCCAACAAAA CCGTATCAGA AGCCGGATCC 
TCAGTCGTGG GAAATATTAA CTGTACCCAA TTAGATATAT CTGGATCTGT TAAGGGCCTA 
ATCCAAGCAA CCAATGTCAT CATTCGCAAA GGCGCACTAG TTGAGGGAGA AGTTCACTAC 
TCAACACTAG CCATGGAACA AGGTTGCGAA GTTCTTGGAA AGCTAAAGAA AATCTCAGAA 
AAGCCGCTCC CCTCTAGAAC ATCAACCAGC ACCCCTGAAA CAAAAACCCA AACTGCAGAA 
GTGATCCTCT TAAACTTCCC CAATGAACTG AAGGCAAAAC TACAAGGTTC AGGCGCACTA 
TCTTCAGCAC GTTTAACTCT GGTTGATGGC AGCACGGCAC CAGCCTGGGT TAACCTAACC 
GGTGACAAAC TTGGTCTTTT GGTAAGCAAC AGTGAAATCC AAGAACTCAA AAATAGAAAT 
GAAACATTGC AATTAAGATT GAATGCTGGA GAAAATTACT ACGACTTCTC CCTTCCGCTC 
TAA 

 

Protein sequence

MSNNQNPSRQ SDQGIDEDNV LLLGKNFNIV GDLIGQGTVI VSGRVEGNIS SNKTVSEAGS 
SVVGNINCTQ LDISGSVKGL IQATNVIIRK GALVEGEVHY STLAMEQGCE VLGKLKKISE 
KPLPSRTSTS TPETKTQTAE VILLNFPNEL KAKLQGSGAL SSARLTLVDG STAPAWVNLT 
GDKLGLLVSN SEIQELKNRN ETLQLRLNAG ENYYDFSLPL