| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1088 |
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| Symbol | |
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| ID | 5053106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1093464 |
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| End bp | 1095065 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640471257 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001155868 |
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| Protein GI | 145589271 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.703546 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACAG TAAAAGAAAT CACATTTGAT TTATTGCGAA AGCTTCAGGT AACCACAGTA
GTTGGTAATC CTGGTTCTAC TGAAGAAACA TTTCTCAAAG ATTTTCCATC TGACTTTAAT
TATGTATTAG CTCTTCAAGA GGCTAGTGTG GTCGCTATTG CAGATGGACT TTCTCAAAGT
TTGCGTAAGC CGGTCATTGT GAATATTCAT ACTGGAGCTG GACTAGGTAA TGCGATGGGG
TGTTTACTCA CTGCGTATCA AAATAAAACG CCTCTCATTA TTACTGCTGG TCAGCAAACT
CGTGAAATGC TCTTGAATGA ACCTCTGCTA ACCAATATTG AAGCTATTAA TATGCCCAAG
CCTTGGGTGA AATGGAGCTA TGAGCCAGCA AGACCGGAAG ATGTGCCTGG TGCTTTCATG
CGGGCCTATG CAACTGCGAT GCAGCAACCC CAGGGCCCCG TATTTTTATC TCTCCCTCTA
GACGATTGGG AAAAATTGAT CCCTGAGGTC GATGTTGCAC GAACTGTATC CACTAGACAA
GGGCCCGATC CGGACAAAGT GAAGGAATTT GCCCAGCGTA TTACCGCTAG CAAAAACCCG
TTGTTAATAT ATGGCTCAGA TATTGCTAGA AGCCAAGCAT GGTCTGACGG CATTGCATTT
GCAGAGCGCT TAAATGCACC TGTGTGGGCT GCTCCATTTG CTGAGCGCAC CCCCTTCCCA
GAAGACCATC CTTTATTTCA AGGAGCGCTT ACTTCGGGTA TCGGTTCGCT GGAAAAGCAA
ATTCAAGGCC ACGATCTGAT TGTTGTGATT GGCGCGCCAG TCTTCCGCTA TTACCCATGG
ATAGCAGGGC AGTTTATTCC TGAAGGCTCA ACATTATTGC AGGTAAGTGA TGATCCGAAT
ATGACATCGA AAGCAGTGGT TGGTGATAGC TTGGTAAGTG ATAGCAAACT ATTTTTAATT
GAGGCCTTAA AGCTTATTGA TCAGCGCGAA AAAAATAACA CGCCTCAACG ATCTCCTATG
ACGAAAGAAG ATCGCACGGC AATGCCTTTA AGGCCTCATG CCGTACTTGA GGTTCTGAAA
GAAAATTCAC CCAAAGAGAT TGTTTTGGTG GAAGAGTGCC CCTCGATTGT TCCTTTGATG
CAGGATGTGT TCCGCATTAA TCAACCGGAC ACTTTTTATA CCTTTGCTTC TGGTGGTTTG
GGGTGGGATT TGCCTGCTGC AGTAGGCTTG GCTTTAGGTG AAGAAGTATC CGGTAGAAAT
AGACCTGTGG TTACTCTCAT GGGTGACGGT TCTTTCCAGT ATTCGGTTCA AGGGATATAT
ACGGGTGTTC AGCAAAAAAC ACACGTAATT TATGTTGTGT TTCAGAATGA GGAGTACGGC
ATATTGAAGC AATTTGCTGA GCTAGAACAA ACACCGAATG TTCCTGGATT AGATTTACCG
GGCTTAGATA TTGTTGCGCA GGGCAAGGCT TATGGTGCTA AATCTTTAAA AGTGGAAACT
CTGGACGAAC TAAAAACTGC TTATCTAGAA GCTTTGTCAT TTAAAGGAAC TTCAGTCATC
GTTGTTCCTA TCACCAAAGA ATTAAAGCCT TTATTTGGGT AG
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| Protein sequence | MRTVKEITFD LLRKLQVTTV VGNPGSTEET FLKDFPSDFN YVLALQEASV VAIADGLSQS
LRKPVIVNIH TGAGLGNAMG CLLTAYQNKT PLIITAGQQT REMLLNEPLL TNIEAINMPK
PWVKWSYEPA RPEDVPGAFM RAYATAMQQP QGPVFLSLPL DDWEKLIPEV DVARTVSTRQ
GPDPDKVKEF AQRITASKNP LLIYGSDIAR SQAWSDGIAF AERLNAPVWA APFAERTPFP
EDHPLFQGAL TSGIGSLEKQ IQGHDLIVVI GAPVFRYYPW IAGQFIPEGS TLLQVSDDPN
MTSKAVVGDS LVSDSKLFLI EALKLIDQRE KNNTPQRSPM TKEDRTAMPL RPHAVLEVLK
ENSPKEIVLV EECPSIVPLM QDVFRINQPD TFYTFASGGL GWDLPAAVGL ALGEEVSGRN
RPVVTLMGDG SFQYSVQGIY TGVQQKTHVI YVVFQNEEYG ILKQFAELEQ TPNVPGLDLP
GLDIVAQGKA YGAKSLKVET LDELKTAYLE ALSFKGTSVI VVPITKELKP LFG
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