| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1058 |
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| Symbol | |
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| ID | 5052585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1061718 |
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| End bp | 1063265 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471226 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_001155838 |
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| Protein GI | 145589241 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATA AAGTAATCAT TTTTGACACC ACCTTGCGTG ATGGCGAGCA ATCCCCTGGG
GCATCAATGA CCAAGGACGA GAAGGTCCGC ATTGCCCGTC AATTAGAGCG CCTCAAAGTC
GACGTGATTG AGGCTGGATT TGCAGCTAGC TCTGAAGGTG ACTTTCAGGC GATATCTGCG
GTTGCTGCAG CAGTAAAAGA TTCTATTGTG TGCTCCTTGG CTAGAGCCAA TGACAAGGAC
ATTACTCGCG CTGCCGATGC TTTGCAGGCT GCCAATGCCA AGCGCATTCA TGCATTTTTG
GCAACGAGTC CCTTACATAT GGCAGTTAAA TTGCGCATGT CTCCAGAAGA GGTGTTAGAG
CAAGCTAAGC GTTCGATTCG CTTTGCTCGT AATTTGGCAT CGGATATTGA ATTCTCCGCA
GAAGATGGAT ATCGCTCAGA GATGGATTTC TTGTGCCGTG TCGTTGAAGC GGTAATTAAT
GAGGGCGCAT CTACCATCAA TATTCCCGAT ACCGTCGGCT ATGCAACACC TGAGTTATAT
GGTGATTTCA TCAAAACCTT GCGCACCCGC GTGCCCAATT CAGATAAGGC AGTTTGGTCT
GTGCATTGTC ATAACGACTT AGGCATGGCG GTTGCCAATT CATTGGCGGG CGTAAAAATT
GGTGGCGCAC GCCAGATCGA GTGCACGATC AATGGCCTTG GTGAGCGAGC AGGCAATACC
GCTTTAGAAG AAATTGTGAT GGCATTGCGC ACTCGTAAGG ATTACTTTGA TATGGTGTGC
GGTATCGATG CAAGCCAAAT TGTTCCAGCA TCCAAATTGG TTTCTCAAAT TACTGGTTTT
GTCGTTCAAC CTAACAAAGC TGTTGTTGGC GCAAATGCCT TTGCACACAC CTCAGGCATT
CATCAAGATG GTATTTTGAA AAATCGTGAT ACCTATGAAA TCATGCGTGC AGAAGATGTG
GGCTGGTCTG CCAATAAGAT TGTTTTGGGC AAGTTATCCG GCCGAAATGC TTTTAAGCAA
CGCTTGCAAG AATTGGGAAT TACAGTTGAG GCTGAGGCTG ATTTGAATGA GGCATTTACA
CGCTTTAAGG CATTGGCTGA CCAAAAGTCT GAAATTTTTG ATGAAGATAT TATTGCCATC
ATGTCTGATT CAGCGGCAGC GGAAGAGGGC GAACACTACC ACTTCATCAG CTTAAGTCAG
CATTCTGAAA CTGGCGAGCG TCCAAAGTCA CGTGTCATTT TCCGCATGGG TGACAAGGAA
GTGAGTTCTG AAGCTGAGGG TAATGGCCCA GTTGACGCTA GCTTGAATGC CATTGAAGAA
ATTGCCAAGA GCGGGGCAGA GCAGTTGCTC TATTCTGTGA ATGCAATTAC CTCTGGTACG
CAATCACAAG GAGAGGTAAC CGTACGTCTT TCTAAGGGTG GCCGTATTGT TAATGGGGTA
GGAACTGATC CTGACATCAT TGCCGCTTCA GCTAAAGCCT ATTTGTCTGC TTTAAACAAA
TTGCATGATC CAAGTCAGGC TAAGCTAAAT GCGCAAATGG CACCTTAA
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| Protein sequence | MSDKVIIFDT TLRDGEQSPG ASMTKDEKVR IARQLERLKV DVIEAGFAAS SEGDFQAISA
VAAAVKDSIV CSLARANDKD ITRAADALQA ANAKRIHAFL ATSPLHMAVK LRMSPEEVLE
QAKRSIRFAR NLASDIEFSA EDGYRSEMDF LCRVVEAVIN EGASTINIPD TVGYATPELY
GDFIKTLRTR VPNSDKAVWS VHCHNDLGMA VANSLAGVKI GGARQIECTI NGLGERAGNT
ALEEIVMALR TRKDYFDMVC GIDASQIVPA SKLVSQITGF VVQPNKAVVG ANAFAHTSGI
HQDGILKNRD TYEIMRAEDV GWSANKIVLG KLSGRNAFKQ RLQELGITVE AEADLNEAFT
RFKALADQKS EIFDEDIIAI MSDSAAAEEG EHYHFISLSQ HSETGERPKS RVIFRMGDKE
VSSEAEGNGP VDASLNAIEE IAKSGAEQLL YSVNAITSGT QSQGEVTVRL SKGGRIVNGV
GTDPDIIAAS AKAYLSALNK LHDPSQAKLN AQMAP
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