| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1028 |
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| Symbol | |
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| ID | 5053834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1030978 |
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| End bp | 1032111 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471195 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_001155808 |
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| Protein GI | 145589211 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.20432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCATCA TTATTCAAAT TAAAAAATAC GGAGACCAGT TAATGAATGC AAAAAAAATC
TTTAAAAATC CGAAAATAGC GGTTATCGCT GGTGATGGTA TCGGCAAGGA AGTGATGCCT
GAGGGCGTTC GCGCTCTTGA GGCGGCTAAT CGCAAGTTTA ATATTGGCAT GCAATTTGAC
CACTTTGATT TTGCAAGTTG TGATTACTAT CTCAAGCACG GCAAGATGAT GCCGGATGAT
TGGTTCGATA CCCTAATGAA ATACGACGCC ATCTTCTTTG GCGCCGTTGG CATGCCAGAC
ATTCTTCCTG ACCACGTGTC TTTGTGGGGA AGCTTAATTC AATTCCGCCG TGGTTTTGAT
CAGTATGTGA ATTTACGTCC TGTTCGCCTT TTGCCTGGTG TTCCTTGTCC ATTGGCGAAT
CGCAAGCCTG GCGATATTGA TTTCTTCGTG GTTCGTGAAA ATACTGAAGG TGAGTATTCC
AGTGTTGGTG GAAAAATGTT CCCCGATACT GATCGTGAAT TTGTCATACA AGAATCCATC
TTTACAAGAC AGGGCGTTGA TCGCATCCTG AAATACGCTT TCGACCTTGC TCAAAGCAGA
CCCAAGAAAC ATTTGACTTC AGCGACCAAG TCTAATGGTA TTGCAATCAC CATGCCTTAT
TGGGATGAGC GTGTAGAAGC CATGTCAAAG AATTTTGCCG ATGTGCGTAC TGATAAATAC
CACATTGATA TCCTGGCTGC GCACTTTGTA ATGAATCCAG ACCGTTTCGA CGTGGTAGTT
GCCAGCAATC TTTTTGGCGA CATCCTGTCT GACTTAGGAC CAGCATGTAC CGGAACAATC
GCGGTTGCAC CATCGGGAAG TATTAATCCT GAAGGGAAGT TCCCGTCACT CTTCGAGCCG
GTTCATGGTT CAGCCCCAGA TATTTACGGA AAAATGATTG CCAATCCAAT CGGTCAAATC
TGGAGTGGAG CAATGATGCT GGATCACCTA GGCTATCCAG AGGCTGGTCA AGCTATTTTC
TCGGCAATTG AAAAAGTACT CGCATCTGGA GCAGGTCATG CACCTTTAAC TCCTGACTTG
GGTGGTACAG CAAAGACTGA CGACCTAGGT AAAGCTATCG CCGCAGCCAT CTAA
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| Protein sequence | MGIIIQIKKY GDQLMNAKKI FKNPKIAVIA GDGIGKEVMP EGVRALEAAN RKFNIGMQFD
HFDFASCDYY LKHGKMMPDD WFDTLMKYDA IFFGAVGMPD ILPDHVSLWG SLIQFRRGFD
QYVNLRPVRL LPGVPCPLAN RKPGDIDFFV VRENTEGEYS SVGGKMFPDT DREFVIQESI
FTRQGVDRIL KYAFDLAQSR PKKHLTSATK SNGIAITMPY WDERVEAMSK NFADVRTDKY
HIDILAAHFV MNPDRFDVVV ASNLFGDILS DLGPACTGTI AVAPSGSINP EGKFPSLFEP
VHGSAPDIYG KMIANPIGQI WSGAMMLDHL GYPEAGQAIF SAIEKVLASG AGHAPLTPDL
GGTAKTDDLG KAIAAAI
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