Gene Pnuc_1013 details

Gene Information

• Locus tag: Pnuc_1013
• ID: 5053415
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: -
• Start bp: 1011005
• End bp: 1012870
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640471180
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_001155793
• Protein GI: 145589196
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCCAAA AAATCGGTGT GTGGCTCATT GTGGGCTTAG TGCTTTTTAC TGTGTTTAAA 
CAGTTCGACA AGCCTAAGGA TCAGAATCAG GTCACCTATT CCCAATTCAT GGATGATGCA 
AAAGCGGGCA AAGTTAAGCG TGTAGATGTG CAAGGTCGCA CATTGCAAGT AACTCCTGCA 
GATGGAAATA AATATTCCAT CATCTCTCCT GGTGATATCC GGATGGTTGG TGACCTCATG 
AAGTATGGAG TTCAAGTAAC TGGCAAGGCC GATGATGAGC CTAATATGCT GGTGTCTGCT 
TTGTACTATC TTGGGCCAAC TTTATTGATT ATTGGTTTTT GGTTTTTCAT GATGCGTCAA 
ATGCAGGGTG GCGGTAAGGG CGGTGCATTC TCTTTCGGCA AATCCAAAGC GCGTCTGATT 
GATGAAAACA GTAATACAGT TACCTTTGCA GATGTTGCCG GTTGCGACGA GGCCAAGGAA 
GAGGTCTTCG AGTTGGTGGA CTTCTTAAAG GATCCGCAAA AATTTCAAAA GCTAGGCGGG 
CGTATACCGC ACGGCGTTCT TTTGGTTGGC CCTCCAGGTA CTGGTAAAAC CTTGCTTGCA 
AAGGCAATTG CTGGCGAAGC TAAAGTCCCT TTCTTCTCTA TCTCCGGCTC AGATTTCGTA 
GAGATGTTTG TTGGTGTTGG TGCATCTCGT GTTCGCGATA TGTTCGAAAA CGCCAAAAAG 
AATTCTCCTT GCATCATCTT CATTGATGAG ATTGATGCTG TAGGTCGTCA TCGTGGCGCT 
GGTATGGGCG GCGGTAATGA TGAGCGTGAG CAAACACTCA ACCAAATGCT CGTTGAGATG 
GATGGTTTTG AAAGTAACAG CGGTGTGATT GTTGTTGCCG CCACCAATAG ATCTGATGTA 
TTGGATAAAG CGTTGCTAAG ACCAGGTCGT TTTGACCGTC AGGTGCACGT TGGCTTACCT 
GATATCCGCG GTCGCGAACA AATTTTGCAA GTTCATATGC GTAAGGTACC GATTGATCCA 
GATGTGAATG CGGCAGTGTT AGCCCGTGGC ACACCTGGCT TCTCAGGCGC TGATTTGGCT 
AACTTGGTTA ACGAATCCGC TTTATTTGCT GCACGTCGTA ATAAGCGTTC GGTTGATATG 
AAGGATTTTG AAGACGCAAA AGACAAGATT TACATGGGGC CTGAGCGCAA ATCTGCTGTG 
ATGCGTGAAG AAGAGCGTCG TAATACCGCA TATCATGAAT CTGGTCATGC TGTAGTTGCA 
AAAGTATTGC CTAAAGCAGA TCCCGTGCAT AAGGTCACTA TCATGCCTCG TGGTATGGCA 
TTGGGCGTTA CTTGGCAGTT ACCGGAGTTT GACCGTGTGA ACTTATATAA AGATCGCATG 
TTGGAAGAGT TGGCGATTTT ATTTGGTGGC CGTGCCGCTG AAGAAGTTTT CTTGCACTCA 
ATGAGTACAG GTGCATCGAA TGACTTCGAG CGAGCTACTA AAATGGCGCG CGATATGGTG 
ACTCGATACG GTATGAGCGA TAGTCTCGGC ACGATGGTTT ATGTCGACAC TGAATCCGAA 
AGTATTTTTG GCCGCACGAA TTCTAAAACT GTTTCTGAGT TAACTCAACA AAAGGTAGAT 
GCAGAAATTC GGATGCTGAT TGATAGTCAA TATGCTTTAG CACGATCCAT CCTTGAGCAA 
AACCGAGATA AAGTCGAGGC AATGGTTGCC GCTTTGCTCG AATGGGAAAC CATAGATGCC 
GAGCAAATCA ACGACATCAT GGAAGGCCGT CCTCCGCGCA CCCCTAAGCC GCCACCTGCT 
ACTCAGTTTG GAAATTCTGC TGGAACTCCA GGGCCTGCTG CCGGCAGCGC CCCAGCAACT 
GCATAA 

 

Protein sequence

MFQKIGVWLI VGLVLFTVFK QFDKPKDQNQ VTYSQFMDDA KAGKVKRVDV QGRTLQVTPA 
DGNKYSIISP GDIRMVGDLM KYGVQVTGKA DDEPNMLVSA LYYLGPTLLI IGFWFFMMRQ 
MQGGGKGGAF SFGKSKARLI DENSNTVTFA DVAGCDEAKE EVFELVDFLK DPQKFQKLGG 
RIPHGVLLVG PPGTGKTLLA KAIAGEAKVP FFSISGSDFV EMFVGVGASR VRDMFENAKK 
NSPCIIFIDE IDAVGRHRGA GMGGGNDERE QTLNQMLVEM DGFESNSGVI VVAATNRSDV 
LDKALLRPGR FDRQVHVGLP DIRGREQILQ VHMRKVPIDP DVNAAVLARG TPGFSGADLA 
NLVNESALFA ARRNKRSVDM KDFEDAKDKI YMGPERKSAV MREEERRNTA YHESGHAVVA 
KVLPKADPVH KVTIMPRGMA LGVTWQLPEF DRVNLYKDRM LEELAILFGG RAAEEVFLHS 
MSTGASNDFE RATKMARDMV TRYGMSDSLG TMVYVDTESE SIFGRTNSKT VSELTQQKVD 
AEIRMLIDSQ YALARSILEQ NRDKVEAMVA ALLEWETIDA EQINDIMEGR PPRTPKPPPA 
TQFGNSAGTP GPAAGSAPAT A