Gene Pnuc_1001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1001 
Symbol 
ID5052925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp998163 
End bp998513 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content48% 
IMG OID640471166 
Productnitrite reductase (NAD(P)H), small subunit 
Protein accessionYP_001155781 
Protein GI145589184 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAATA CCGCCCAACT TGATCAGTGG CAAAAAATCA CAACAGTTGA TGAGATTCCT 
GTTCTGGGAT CTCGGGTTAT TGAAGCGCCA GCTGGTCAAA TAGCTATTTT CAGAAATTCA 
GAAGACGAAG TATTTGCCGT ATTGGATAAG TGCCCGCATA AGGGTGGCCC CCTGTCTCAG 
GGCATTGTCC ATGGAAAATC CGTAACCTGT CCACTGCATT CCTGGAATAT AGATCTCTCC 
ACTGGCTGTG CAGTTGCCCC AGATGAAGGC TGTGCTAAAT CCTTTGCAGT CAAAGTAGAG 
TCTGGTGTGG TTTGGCTAAG CCGCGAGGAA TTGCAAGCTA CTCATGGCTG A
 
Protein sequence
MSNTAQLDQW QKITTVDEIP VLGSRVIEAP AGQIAIFRNS EDEVFAVLDK CPHKGGPLSQ 
GIVHGKSVTC PLHSWNIDLS TGCAVAPDEG CAKSFAVKVE SGVVWLSREE LQATHG