| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0970 |
|---|
| Symbol | |
|---|
| ID | 5053362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 969582 |
|---|
| End bp | 970064 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471135 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001155750 |
|---|
| Protein GI | 145589153 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.523818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC AAGTTCAAAT TAATCCGCAA ACTCAACTTG CCAATCTAGG CGAGGAGTTG
AATGTCCCTT TCTTAAAACT GCTTGGAGTT CGTTTCCTCA GTGCTGAAAT GGGTAAGGGG
GAGATTTTAT TGGCTCTTAA GCCCGAACAT ACCAACACAT GGGCGGTGGC TCATGGAGGT
GTATTGCTAA CACTAATGGA TGTTGCGATG GCGGTCGCCG CTCGATCAGG AGATCCCGGG
GATCGCAGTG TTGTTACGAT TGAGTTGAAG AATAACTTTA TGCAAGCGGC TAACGGTATT
TTGCGCGTGA AGGCTGATAC TGTTAGAAGA ACTGCAACAA TGGCTTTTTG CGAGGCAAAG
TTATACAACG ATCAAGGTGA GGTTTGCTGC ATGGCCACGG GAACTTTCCA GTTCATAAAG
CGCTTACCAA CTCGCAATGC CGATGGTGAA CGCGTCATCA ATGAAGATCA ACGTTCTAAA
TAA
|
|---|
| Protein sequence | MTKQVQINPQ TQLANLGEEL NVPFLKLLGV RFLSAEMGKG EILLALKPEH TNTWAVAHGG
VLLTLMDVAM AVAARSGDPG DRSVVTIELK NNFMQAANGI LRVKADTVRR TATMAFCEAK
LYNDQGEVCC MATGTFQFIK RLPTRNADGE RVINEDQRSK
|
|---|
| |