Gene Pnuc_0960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0960 
Symbol 
ID5053328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp961120 
End bp961689 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content45% 
IMG OID640471125 
ProductHNH endonuclease 
Protein accessionYP_001155740 
Protein GI145589143 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.639629 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGAGCA TCCTAAAATT AGACGCAGGC GGAATTCCTC AAGGCTGGGT AAATGCCGAG 
GAAGCTACCA AGATATACGC TGATCAAAAC ATTTTATGGA CTCTAGGCGA TCCTATTAAA 
ACAATGCGTG GTGGGATATC TCGTAGTAGC GGTCTTCAAT CGGCAATCGA GCTCCATTCC 
ATCATTGCCA TCAAAGGCAC AGCAAAGATT AATCTTTTTG ATGTAGTGCC TGTGATTACC 
AAACATAAAC TTTTCAAACG AGATCGTGGA CTGTGTGCAT ATTGCGGGGA TGTCATCCAA 
GAGAGTCATG CAGAGGCCGA GCACATCATT CCAAATAGTC GTGGTGGAAA ATACACTTGG 
ATGAATTTGG TTGTTTCTTG CAGACCATGC AATCAACGTA AAGGTAATCG CACGCCCGAA 
CAAGCCGGAA TGGCCCTGTT GTATGCACCT TATATGCCCA GCCTTTATGA AGACATGATT 
CTCAAGGGCC GCAATATCCT AGCGGATCAA ATGGATTTTT TAGCAGCTAA TCTCCCTAAG 
AATAGCCGCT TACTTGAGAG CATTCGCTGA
 
Protein sequence
MLSILKLDAG GIPQGWVNAE EATKIYADQN ILWTLGDPIK TMRGGISRSS GLQSAIELHS 
IIAIKGTAKI NLFDVVPVIT KHKLFKRDRG LCAYCGDVIQ ESHAEAEHII PNSRGGKYTW 
MNLVVSCRPC NQRKGNRTPE QAGMALLYAP YMPSLYEDMI LKGRNILADQ MDFLAANLPK 
NSRLLESIR