| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0934 |
|---|
| Symbol | |
|---|
| ID | 5053438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 931548 |
|---|
| End bp | 932177 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471095 |
|---|
| Product | ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| Protein accession | YP_001155714 |
|---|
| Protein GI | 145589117 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.593149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGA ACCATTTTCA GTCAGAAAAT TTAGAGCCAA AAGGTTTGGG TCTGGTTCCT
ATGGTCATTG AGACCTCTGG ACGCGGCGAG CGAGCGTATG ACATCTACTC CCGCCTATTA
AGAGAGCGCG TAGTGTTCTT GGTTGGCGAG GTGAATGATC AAACCGCAAA CTTGGTGATC
GCCCAACTCT TATTCCTTGA GAGCGAAAAC CCAGACAAAG ATATTTCTTT GTATATCAAC
TCACCGGGTG GATCAGTATC GGCAGGTTTA GCCATTTACG ATACGATGCA ATTCATTAAG
CCTCATGTCA GCACCCTTTG CATGGGTATG GCAGCTAGCA TGGGTGCATT CTTATTGTGT
GCTGGTGAAA AGGGCAAGCG CTATGCCTTG CCAAATTCAC GCGTAATGAT TCACCAGCCT
TTAGGTGGTG CACGTGGCCA AGCATCCGAT ATTGAAATTC AAGCTCGCGA AATTTTGTAC
TTGCGTGAGC GTTTGAACAA GATTCTGGCT GATCGCACTG GCCAATCGAT TGATACCATT
GCAAAAGATA CTGATCGCGA TAATTTTATG TCTGCTGAGC AAGCCCGTGA GTATGGCTTG
ATCGACAAAG TGATCGAAAA GCGCCCTTAA
|
|---|
| Protein sequence | MNQNHFQSEN LEPKGLGLVP MVIETSGRGE RAYDIYSRLL RERVVFLVGE VNDQTANLVI
AQLLFLESEN PDKDISLYIN SPGGSVSAGL AIYDTMQFIK PHVSTLCMGM AASMGAFLLC
AGEKGKRYAL PNSRVMIHQP LGGARGQASD IEIQAREILY LRERLNKILA DRTGQSIDTI
AKDTDRDNFM SAEQAREYGL IDKVIEKRP
|
|---|
| |