Gene Pnuc_0931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0931 
Symbol 
ID5052499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp928827 
End bp929330 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content48% 
IMG OID640471091 
Product2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
Protein accessionYP_001155711 
Protein GI145589114 
COG category[I] Lipid transport and metabolism 
COG ID[COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
TIGRFAM ID[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAGT CGTCCCCACA CATTCCTCAA TTTCGCATAG GTCAAGGCTA CGATGTTCAT 
GCGTTAGTAC CCGAGCGAAA GCTTATTTTG GGTGGCGTGC ATGTCCCTCA TGAAAAGGGA 
CTATTGGGGC ATTCAGATGC AGACGCGCTT TTGCATGCGC TAACAGACTC ACTTTTAGGC 
GCAGCTGGAC TAAACGATAT TGGTCAGTTA TTTCCTGACA CAGATCCCCA ATTTAAAGAT 
ATGGATAGCC GTATTTTGCT CAGAGCAGCT CTACAGAAGG TGCAGGCAGC CGGCTTTCAC 
ATTGGGAACG TGGACGCCAC CATTATTTGC CAGAAGCCGA AACTTGCAGA GTACTTGCCT 
GAAATGGTTC GCAATATTGC CGCTGATTTG TCAGTCACAC CCAGTCATGT CAACCTGAAG 
GCAAAAACAA ATGAATCACT TGGACATTTG GGGCGGGGCG AAGGCATTGC GGTGCACGCT 
GTTGCCTTGT TATACAAGGT ATAA
 
Protein sequence
MNQSSPHIPQ FRIGQGYDVH ALVPERKLIL GGVHVPHEKG LLGHSDADAL LHALTDSLLG 
AAGLNDIGQL FPDTDPQFKD MDSRILLRAA LQKVQAAGFH IGNVDATIIC QKPKLAEYLP 
EMVRNIAADL SVTPSHVNLK AKTNESLGHL GRGEGIAVHA VALLYKV