Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0900 |
Symbol | |
ID | 5053139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 892817 |
End bp | 894805 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640471060 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_001155680 |
Protein GI | 145589083 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTACCC GTAAAACTTC TGAATACAGC GAATCATCGA TTCAGGTCCT AAAAGGACTA GAACCAGTCC GTCAGCGGCC TGGTATGTAC ACCCGAACCG ACAACCCATT GCACATCATC CAGGAGGTGT TGGATAACGC CTCAGATGAA GCTTTAGGGG GATTTGGCAA ACACATTACC GTCACTTTAC ATACTGATAG CAGCGTGAGC GTTGAGGATG ATGGACGCGG TATTCCAGTG GGCATTCATC CTACGGAAAA GCTTCCTGTC GTTGAAATTG TCTTTACACA GTTACATGCT GGTGGCAAGT TTGAAAAAGG CACGGGCGGT GCTTATGCAT TCTCAGGTGG TTTACATGGT GTCGGTGTCT CAGTAACCAA TGCGCTATCG AAAAGATTAG AAGTCACCGT TTGGCGTGAG GGACAAGTTT CTACTTTGAC CTTTGCTGAT GGCAAGGTAA TCGAAAAGCT TAAAACGAGA GCATCCTCAA AAGAAGATAA GTCACACGGT ACCCGTGTGC GTGCATGGCC AGATAGCAAG TACTTTGATA GTGCTGCAAT TCCTATGCCT GAGTTGATTC GTCTCTTGCG CTCTAAGGCA GTTCTCCTGC CAGGCGTTAA GGTTACTTTG ATCCAAGAAA AGTCTGGTGA TAGCCAAACA TGGCAATATG CGCAAGGCTT ACGAGGCTAT CTCAATGAGG CTATAGCTCA GGCTGGCCAT GGCCCAGAAG TGATTCCCCC ATTTGAAGGT GAGCAATATG CAACCGGTAA TGGCGAGGAT GATTCTTTTG CTGAGGGCGA GGGCGCTGCA TGGGTTGTGA GCTGGACTGA AGATGGTGCA CCAGTTCGCG AGAGTTATGT AAACCTCATT CCCACTCCAG CTGGTGGTAC GCATGAGAGT GGATTACGTG AAGGCTTATT TAATGCAGTA AAAGGCTTTA TCGAAATGCA TGCTTTGCAG CCTAAGGGTG TAAAGCTTAT GCCTGAGGAT GTATTTGCAC GTGCTTCATT TATCTTATCC GCAAAAGTAT TGGATCCACA GTTCCAAGGA CAAATTAAAG AGCGCCTCAA CTCAAGAGAT GCAGTGCGTT TAGTGTCTGG CTATGCAAAA TCAGCCCTTG AACTTTGGCT TAATCAACAC GTTGACTATG GTCGTAAGCT TGCTGACTTA GTTATTAAAC AAGCACAAGC ACGGACTCGC GCTGGCCAAA AAGTAGAAAA GAAAAAATCT TCTGGCGTCG CCGTTTTACC GGGTAAGCTA ACCGATTGCG AGAGTGAAGA TATTGCCCAG AATGAAATCT TCCTAGTTGA GGGTGATTCA GCTGGCGGTT CGGCCAAAAT GGGTCGTAAT AAGGAATATC AAGCCATCCT GCCATTGCGC GGCAAGGTCT TAAACACCTG GGAAGCAGAG CGGGATCGTT TATTTGCCAA TAATGAAGTG CACGATATCG CGGTAGCGAT TGGGGTGGAC CCTCACGGAC TTAATGACAC TCCAGACCTA TCAAACTTAC GTTACGGTAA GGTGTGCATT TTGTCTGATG CGGACGTAGA TGGTGCGCAT ATTCAGGTTC TTTTACTCAC CCTGTTCTAC AAGCATTTCC CTAAATTAAT TGATTTGGGA CATATTTATA TTTCACGTCC ACCCCTCTTT AGGGTGGATG CACCAGCTCG CGGTAAGAAG CCAGCTCAAA AAATCTATGC TTTAGATGCT AGTGAATTGC AAGCGATTGA AGATAAATTA CGTAAAGATG GCGTCAAAGA AACGGCATGG CAAATTTCTC GCTTCAAAGG TTTGGGCGAG ATGAGTGCTG AGCAACTTTG GGATACCACT TTAAATCCCG ATACCCGGCG CTTATTGCCT GTGACTTTAG GCGCTTGGAC CGAAGACGAA ACTTTTAAAA CCATGGATAT GTTGATGGGT AAATCAGAGT CTGGTGCCCG TCGTGACTGG CTTGAAGAGC GCGGTAATGA AGTAGAGGCG GATATTTAA
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Protein sequence | MATRKTSEYS ESSIQVLKGL EPVRQRPGMY TRTDNPLHII QEVLDNASDE ALGGFGKHIT VTLHTDSSVS VEDDGRGIPV GIHPTEKLPV VEIVFTQLHA GGKFEKGTGG AYAFSGGLHG VGVSVTNALS KRLEVTVWRE GQVSTLTFAD GKVIEKLKTR ASSKEDKSHG TRVRAWPDSK YFDSAAIPMP ELIRLLRSKA VLLPGVKVTL IQEKSGDSQT WQYAQGLRGY LNEAIAQAGH GPEVIPPFEG EQYATGNGED DSFAEGEGAA WVVSWTEDGA PVRESYVNLI PTPAGGTHES GLREGLFNAV KGFIEMHALQ PKGVKLMPED VFARASFILS AKVLDPQFQG QIKERLNSRD AVRLVSGYAK SALELWLNQH VDYGRKLADL VIKQAQARTR AGQKVEKKKS SGVAVLPGKL TDCESEDIAQ NEIFLVEGDS AGGSAKMGRN KEYQAILPLR GKVLNTWEAE RDRLFANNEV HDIAVAIGVD PHGLNDTPDL SNLRYGKVCI LSDADVDGAH IQVLLLTLFY KHFPKLIDLG HIYISRPPLF RVDAPARGKK PAQKIYALDA SELQAIEDKL RKDGVKETAW QISRFKGLGE MSAEQLWDTT LNPDTRRLLP VTLGAWTEDE TFKTMDMLMG KSESGARRDW LEERGNEVEA DI
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