Gene Pnuc_0900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0900 
Symbol 
ID5053139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp892817 
End bp894805 
Gene Length1989 bp 
Protein Length662 aa 
Translation table11 
GC content47% 
IMG OID640471060 
ProductDNA topoisomerase IV subunit B 
Protein accessionYP_001155680 
Protein GI145589083 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTACCC GTAAAACTTC TGAATACAGC GAATCATCGA TTCAGGTCCT AAAAGGACTA 
GAACCAGTCC GTCAGCGGCC TGGTATGTAC ACCCGAACCG ACAACCCATT GCACATCATC
CAGGAGGTGT TGGATAACGC CTCAGATGAA GCTTTAGGGG GATTTGGCAA ACACATTACC
GTCACTTTAC ATACTGATAG CAGCGTGAGC GTTGAGGATG ATGGACGCGG TATTCCAGTG
GGCATTCATC CTACGGAAAA GCTTCCTGTC GTTGAAATTG TCTTTACACA GTTACATGCT
GGTGGCAAGT TTGAAAAAGG CACGGGCGGT GCTTATGCAT TCTCAGGTGG TTTACATGGT
GTCGGTGTCT CAGTAACCAA TGCGCTATCG AAAAGATTAG AAGTCACCGT TTGGCGTGAG
GGACAAGTTT CTACTTTGAC CTTTGCTGAT GGCAAGGTAA TCGAAAAGCT TAAAACGAGA
GCATCCTCAA AAGAAGATAA GTCACACGGT ACCCGTGTGC GTGCATGGCC AGATAGCAAG
TACTTTGATA GTGCTGCAAT TCCTATGCCT GAGTTGATTC GTCTCTTGCG CTCTAAGGCA
GTTCTCCTGC CAGGCGTTAA GGTTACTTTG ATCCAAGAAA AGTCTGGTGA TAGCCAAACA
TGGCAATATG CGCAAGGCTT ACGAGGCTAT CTCAATGAGG CTATAGCTCA GGCTGGCCAT
GGCCCAGAAG TGATTCCCCC ATTTGAAGGT GAGCAATATG CAACCGGTAA TGGCGAGGAT
GATTCTTTTG CTGAGGGCGA GGGCGCTGCA TGGGTTGTGA GCTGGACTGA AGATGGTGCA
CCAGTTCGCG AGAGTTATGT AAACCTCATT CCCACTCCAG CTGGTGGTAC GCATGAGAGT
GGATTACGTG AAGGCTTATT TAATGCAGTA AAAGGCTTTA TCGAAATGCA TGCTTTGCAG
CCTAAGGGTG TAAAGCTTAT GCCTGAGGAT GTATTTGCAC GTGCTTCATT TATCTTATCC
GCAAAAGTAT TGGATCCACA GTTCCAAGGA CAAATTAAAG AGCGCCTCAA CTCAAGAGAT
GCAGTGCGTT TAGTGTCTGG CTATGCAAAA TCAGCCCTTG AACTTTGGCT TAATCAACAC
GTTGACTATG GTCGTAAGCT TGCTGACTTA GTTATTAAAC AAGCACAAGC ACGGACTCGC
GCTGGCCAAA AAGTAGAAAA GAAAAAATCT TCTGGCGTCG CCGTTTTACC GGGTAAGCTA
ACCGATTGCG AGAGTGAAGA TATTGCCCAG AATGAAATCT TCCTAGTTGA GGGTGATTCA
GCTGGCGGTT CGGCCAAAAT GGGTCGTAAT AAGGAATATC AAGCCATCCT GCCATTGCGC
GGCAAGGTCT TAAACACCTG GGAAGCAGAG CGGGATCGTT TATTTGCCAA TAATGAAGTG
CACGATATCG CGGTAGCGAT TGGGGTGGAC CCTCACGGAC TTAATGACAC TCCAGACCTA
TCAAACTTAC GTTACGGTAA GGTGTGCATT TTGTCTGATG CGGACGTAGA TGGTGCGCAT
ATTCAGGTTC TTTTACTCAC CCTGTTCTAC AAGCATTTCC CTAAATTAAT TGATTTGGGA
CATATTTATA TTTCACGTCC ACCCCTCTTT AGGGTGGATG CACCAGCTCG CGGTAAGAAG
CCAGCTCAAA AAATCTATGC TTTAGATGCT AGTGAATTGC AAGCGATTGA AGATAAATTA
CGTAAAGATG GCGTCAAAGA AACGGCATGG CAAATTTCTC GCTTCAAAGG TTTGGGCGAG
ATGAGTGCTG AGCAACTTTG GGATACCACT TTAAATCCCG ATACCCGGCG CTTATTGCCT
GTGACTTTAG GCGCTTGGAC CGAAGACGAA ACTTTTAAAA CCATGGATAT GTTGATGGGT
AAATCAGAGT CTGGTGCCCG TCGTGACTGG CTTGAAGAGC GCGGTAATGA AGTAGAGGCG
GATATTTAA
 
Protein sequence
MATRKTSEYS ESSIQVLKGL EPVRQRPGMY TRTDNPLHII QEVLDNASDE ALGGFGKHIT 
VTLHTDSSVS VEDDGRGIPV GIHPTEKLPV VEIVFTQLHA GGKFEKGTGG AYAFSGGLHG
VGVSVTNALS KRLEVTVWRE GQVSTLTFAD GKVIEKLKTR ASSKEDKSHG TRVRAWPDSK
YFDSAAIPMP ELIRLLRSKA VLLPGVKVTL IQEKSGDSQT WQYAQGLRGY LNEAIAQAGH
GPEVIPPFEG EQYATGNGED DSFAEGEGAA WVVSWTEDGA PVRESYVNLI PTPAGGTHES
GLREGLFNAV KGFIEMHALQ PKGVKLMPED VFARASFILS AKVLDPQFQG QIKERLNSRD
AVRLVSGYAK SALELWLNQH VDYGRKLADL VIKQAQARTR AGQKVEKKKS SGVAVLPGKL
TDCESEDIAQ NEIFLVEGDS AGGSAKMGRN KEYQAILPLR GKVLNTWEAE RDRLFANNEV
HDIAVAIGVD PHGLNDTPDL SNLRYGKVCI LSDADVDGAH IQVLLLTLFY KHFPKLIDLG
HIYISRPPLF RVDAPARGKK PAQKIYALDA SELQAIEDKL RKDGVKETAW QISRFKGLGE
MSAEQLWDTT LNPDTRRLLP VTLGAWTEDE TFKTMDMLMG KSESGARRDW LEERGNEVEA
DI