| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0896 |
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| Symbol | |
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| ID | 5053303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 886777 |
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| End bp | 888720 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471055 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_001155676 |
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| Protein GI | 145589079 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.116715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCAA GCAACCCTAA AAATTCTAAA AATGAAATCC CAAGTCTTAA AAGCTTAGAG
CGTGATTTTG GGCAAAAATT TGCTTATCCA GCATCAACCA AAACATACTT ACAGGGATCG
CGTGAAGATA TCAAAGCGCC GATTCGCATG ATTGAGCAAT TGCCAACGCG CGTTGGCGAA
GAGTTGGTAG CAAACCCACC TGTACCCGTT TACGATACTT CCGGTCCTTA CAGTGATCCT
GAGATTGTGA TTAATCTTGA AAAAGGATTG CCACGTTTAC GTGAAGCTTG GATTGCAGAG
CGTAATGACA CAGAGCAACT GAGTGGCCCT AGCTCTGAGT ATGGTGTTGC ACGCTCTAAA
GATGAGGCAA CACAAGAGTT ACGCTTTGCC CACATTAGCG CACCACGCGT AGCCAAGTCC
GGTAATAACG TGAGTCAAAT GTATTACGCC CGCCAAGGAA TTGTTACTCC AGAAATGGAA
TACGTTGCTT TGCGTGAATC CATGGGCCTT GAGCAATTAC GCAAAGATCC TGCATACAAG
CAATTACTCA AGCAGCATCC AGGCAAAAGC TACGGCGCTA ACTTACCCGA TATTGTTACC
GGTGAGTTTG TCCGTCAAGA AATCGCCGCT GGCCGTGCCA TTATTCCCGC CAACATCAAT
CACCCAGAGC TTGAGCCCAT GATTATTGGT CGTAACTTCC GCGTGAAGAT TAACGGCAAC
CTAGGTAACT CTGCAGTGAC CTCCTCTATT AATGAGGAAG TAGAGAAAAT GGTTTGGTCC
ATTCGTTGGG GTGCTGACAC GATCATGGAC TTGTCTACCG GTAAACATAT TCATGAAACA
CGCGAGTGGA TTATTCGCAA TTCTCCAGTT CCAATTGGTA CTGTACCGAT CTACCAAGCG
TTGGATAAAA CCGGTGGTAT TGCAGAAGAC CTCACCTGGG AAATGTTCCG CGATACATTG
GTTGAGCAAG CAGAGCAAGG TGTGGACTAT TTCACCATTC ATGCTGGTGT CTTACTGCGC
TACGTACCTT TAACTGCGGA TCGTATTACC GGTATTGTTT CTCGCGGCGG TTCCATTATG
GCTAAGTGGT GCTTGGCCCA TCACAAAGAA AACTTCCTCT ATACAAAGTT TGATGAAATT
TGCGAGATCA TGAAAGCCTA TGACGTTTCA TTTAGCTTAG GCGATGGTTT GCGTCCTGGC
TGTATTGCTG ATTCCAATGA TGCAGCCCAA TTTGGCGAAT TGCATACATT AGGTGAGCTT
ACAGCTAAAG CCTGGAAACA TGATGTTCAA GTCATGATTG AAGGTCCTGG TCACGTTCCA
ATGCAGCGCA TTGAAGAGAA CATGACTGAA GAGTTAAAGC ATTGCCTAGA AGCCCCCTTC
TACACTCTTG GACCATTGAT TACCGACATT GCCCCAGGTT ACGACCACAT CACCAGCGGT
ATCGGTGCAG CGCAAATTGG TTGGTATGGC ACAGCCATGC TTTGCTATGT CACGCCAAAA
GAGCATTTAG GCTTGCCTGA CAAAGAAGAC GTGCGTGAAG GCATTATTAC TTACAAGATT
GCTGCTCATG GTGCCGATCT TGCTAAAGGT TTGCCAGGTG CACAGGTTCG AGATAACGCC
CTCTCCAAAG CACGTTTTGA ATTCCGCTGG GAAGATCAAT TTAATCTAGG CCTTGATCCT
GAGCGCGCTC GTGAATATCA CGATGCCACT CTACCTGCTG AAGGCGCCAA AATTGCGCAC
TTCTGCTCTA TGTGTGGACC TAAATTCTGC TCTATGAAAA TTACTCAAGA AGTGCGTGAC
TATGCTGCTA CCTTAGATGC GGACGGCAAT CCAAAAGTAC CGTCAAAGGT CATACCGATT
GCAGAAGTTG CTCAAGAGGC AACTAAGGGC ATGGAAGAAA TGTCCGCAGA GTTCCGTAAA
CGCGGCAGTG AGATTTATCA GTAA
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| Protein sequence | MSASNPKNSK NEIPSLKSLE RDFGQKFAYP ASTKTYLQGS REDIKAPIRM IEQLPTRVGE
ELVANPPVPV YDTSGPYSDP EIVINLEKGL PRLREAWIAE RNDTEQLSGP SSEYGVARSK
DEATQELRFA HISAPRVAKS GNNVSQMYYA RQGIVTPEME YVALRESMGL EQLRKDPAYK
QLLKQHPGKS YGANLPDIVT GEFVRQEIAA GRAIIPANIN HPELEPMIIG RNFRVKINGN
LGNSAVTSSI NEEVEKMVWS IRWGADTIMD LSTGKHIHET REWIIRNSPV PIGTVPIYQA
LDKTGGIAED LTWEMFRDTL VEQAEQGVDY FTIHAGVLLR YVPLTADRIT GIVSRGGSIM
AKWCLAHHKE NFLYTKFDEI CEIMKAYDVS FSLGDGLRPG CIADSNDAAQ FGELHTLGEL
TAKAWKHDVQ VMIEGPGHVP MQRIEENMTE ELKHCLEAPF YTLGPLITDI APGYDHITSG
IGAAQIGWYG TAMLCYVTPK EHLGLPDKED VREGIITYKI AAHGADLAKG LPGAQVRDNA
LSKARFEFRW EDQFNLGLDP ERAREYHDAT LPAEGAKIAH FCSMCGPKFC SMKITQEVRD
YAATLDADGN PKVPSKVIPI AEVAQEATKG MEEMSAEFRK RGSEIYQ
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