| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0884 |
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| Symbol | |
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| ID | 5052695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 876398 |
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| End bp | 878146 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471042 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001155664 |
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| Protein GI | 145589067 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00253808 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCAA AGCCTAACGA TTCTAAAAAT GGAACTGAGA CTGGATTACG CAAAGGTTTA
ACCAGTTATG GCGATAAAGG CTTCTCTTTA TTTCTGCGTA AGGCTTTTAT TAAAGGTGCG
GGATATACCA ATAGCGCCTT AGATCGCCCA GTCATTGGAA TTATCAATAC TGGAAGCGCC
TACAACCCCT GCCACGGCAA TATGCCGCAA TTACTTGAAG CCGTAAAGCG TGGTGTGATG
TTGGCGGGTG GTTTACCGAT GGAATTTCCA ACAATCTCGA TTCATGAAAG TTTTGCAGCG
CCGACAAGTA TGTATCTGCG CAATCTCATG TCCATGGATA CCGAAGAAAT GTTGCGAGCT
CAACCAATGG ATGCCGTTGT CATGATTGGT GGATGCGATA AGACTGTGCC GGCACAAATG
ATGGGGGCCG CATCGGCAGG ATTACCGGCG ATTCAATTAA TCACTGGTTC AATGTTGACT
GGATCGCATC GCAATGAACG TGTAGGCGCC TGCACTGACT GTCGTCGCTA CTGGGGTAAA
TTTCGCGCTG GTGAAATTGA TGAGATTGAA AAAGATGAAG TAAATGATCA ACTCGTAGCT
AGCGTTGGTA CTTGTTCTGT GATGGGCACA GCCAGCACCA TGGCTTGTAT TGCAGAAGCT
TTAGGTATGA CTGTGCCCGG TGGCGCAACC CCACCTGCCG TAACAGCTGA CCGTATTCGA
GTTGCCGAAG AAACGGGAAC TTGCGCCGTC AAAATGGCTA AAGAAGGTTT AACGATCGAC
AAAATCTTAA CCGCAGATGC ATTTGAAAAT GCGATGCGCG TATTGCTAGC GATTGGCGGA
TCAACTAACG GCATTGTTCA TTTAGCAGCT ATTGCTGGGC GTATGGGCCT TGAAATTGAT
CTGGATGCTC TAGATAAAAT GGGTAATGAA ACTCCTGTCT TGGTTGATTT AAAGCCTTCG
GGCGATCACT ATATGGAAAA CTTTCATGAT GCGGGTGGCA TGACAGCCCT CCTACGTGAA
CTAAAGCCAC TCCTCAAACT AGATGCATTA ACCGTCAGCG GTAGAACGCT AGGCGAAGAA
ATTGATGCAG GCCCGCCCAG CTTCAAACAA GATGTGGTGC GTAAAATTGA TAACCCAATA
TATCCGCGCG GCAGTATTGC TGTATTGCAT GGCAACTTAG CACCAGGTGG CGCCATCATT
AAACAATCTG CTGCGAATGA AAAACTCATG GAACATGAGG GCCGAGCAGT TGTTTTTGAA
AACTCGGAGG ATTTGGCTAA TCGTATTGAT AGCCTTGACT TAGATGTCAC AGCAGAGGAC
ATTATTGTTT TGAAAAACAT TGGGCCCAAA GGTGCGCCTG GCATGCCTGA GGCTGGATAT
ATTCCAATTC CGATGAAACT AGCCCGCGCT GGCGTCAAAG ATATTGTGCG CATTTCTGAT
GGTCGCATGA GTGGCACCGC TTTTGGAACC ATTGTGTTGC ATGTCACCCC TGAGTCAGCT
ATCGGCGGGC CTTTAGCGCA AGTGCGCAAT GGGGATCGTA TTCGTTTGAG CGTGAAAAAT
CGAGAAATTA GTCTTTTGAT TTCTGAGGCT GAAATGGCTA AGCGTATACA GGAGAATCCA
ATTACTCCTC CTACAGCGGA ACGTGGCTAT AAGAAGCTAT TCCTAGACAC GGTGACGCAA
GCAGATCAAG GCGTGGATTT TGATTTCTTA AGAGCCGCTA AGATAGTTGG TAAGACGCCG
AGTAAATAA
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| Protein sequence | MSSKPNDSKN GTETGLRKGL TSYGDKGFSL FLRKAFIKGA GYTNSALDRP VIGIINTGSA
YNPCHGNMPQ LLEAVKRGVM LAGGLPMEFP TISIHESFAA PTSMYLRNLM SMDTEEMLRA
QPMDAVVMIG GCDKTVPAQM MGAASAGLPA IQLITGSMLT GSHRNERVGA CTDCRRYWGK
FRAGEIDEIE KDEVNDQLVA SVGTCSVMGT ASTMACIAEA LGMTVPGGAT PPAVTADRIR
VAEETGTCAV KMAKEGLTID KILTADAFEN AMRVLLAIGG STNGIVHLAA IAGRMGLEID
LDALDKMGNE TPVLVDLKPS GDHYMENFHD AGGMTALLRE LKPLLKLDAL TVSGRTLGEE
IDAGPPSFKQ DVVRKIDNPI YPRGSIAVLH GNLAPGGAII KQSAANEKLM EHEGRAVVFE
NSEDLANRID SLDLDVTAED IIVLKNIGPK GAPGMPEAGY IPIPMKLARA GVKDIVRISD
GRMSGTAFGT IVLHVTPESA IGGPLAQVRN GDRIRLSVKN REISLLISEA EMAKRIQENP
ITPPTAERGY KKLFLDTVTQ ADQGVDFDFL RAAKIVGKTP SK
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