Gene Pnuc_0864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0864 
Symbol 
ID5053930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp858200 
End bp859507 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content45% 
IMG OID640471024 
ProductHipA domain-containing protein 
Protein accessionYP_001155646 
Protein GI145589049 
COG category[R] General function prediction only 
COG ID[COG3550] Uncharacterized protein related to capsule biosynthesis enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAATA CCACTAAGGA TCTTTTTGTC TTTGCCAATC TTGATGGTGA ATTTGTACCA 
GCAGGACAAC TGCAAGTAGA TGAGGAAGGC TCAAGACTTA TTGCCTCATC ATTTGCTTAT
GGCTTGCGTT ACTTAGATAG GAGCAACGCA CAAGAAGTGG ATCCAGTCGC CCTTAGTCTT
AGGAATAAAA GAGAGATCAA AGGCAAACGC CTCGTTCCAC CTAATGGCTT AGAGGCCTTT
GGTGGAATTC GGGATGCTGC TCCTGATTCC TGGGGAAGAA GAGTGATTGA AGCTAGGCTT
AAGGTTCCAG CCAATAGCCT TCCAGAATCA ACCTATCTAC TCGAAGCAGG TAGTGATCGT
GTTGGGGCTT TAGACATTCG ATCTTCTTTA GATCAAGAGG AGTGCCCTGC TCACGAAAGT
ATACACAATC TGTCATACGT ACTCGAGGGT GCGCAAAAGA TTGAGGCGGG CTTGCCAGTA
TCAGAAGCAC TATCCAGAAT TTTGATTGTG GGTAGCGGTC TTGGGGGCAT GCGCCCTAAG
GCAAGCGTGC GCGATGATGA AAACATTTTA TGGATGGCTA AGTTTCCAGG CAACAATGAT
GGCGCTTTAG ATGTGCCGAG CATTGAATAC GCCACACTCA AACTTGCGCA GTTAGCCGGT
CTTAATGTAG CGCAAACTCA ATTAGAACAA GTTGGCAAGA AAAAAGTGTT GATGGTCAAA
CGCTTTGATC GCTCTTGGAC TGCTTTTGCT CGGCCAGTAG AAATTCGTCA TCATGTCGTT
AGCGCCCTCA CCTTAGTTGC CTGTCACGAA TCAGAATCCA ACACAAAAAG CTATATGGAT
ATTGCGGATA CCATCCGCAG ATATTGCGTG GTTCAAACAG TCAAAGCTGA TATTGAAGAA
CTATATGCAC GCATGATCTT TAATATTTTT GTTAGTAACG ATGATGATCA TCTACGCAAT
CATGCATTCT TATGGAATCA TAAGCTTAAA GGCTGGAGTC TAAGTCCACT CTATGATGTG
ATGCCTCATG CGGTCATTGC AAGTGAGCGT TATCAACATC TAGGCGTTGG ACCTCAAGGT
AAATTGGCCA CGCTCGATAA TGCCTACGGT GCTAAAGAGC GCTTCGGCCT ATCTGCGCAG
CAAGCAAGCT CCATTATCGA TCGCGTATGG CGAGTAACCA GGCAATGGAA AACGCACTTT
GAAAGCCTTG GAATTGTTGC AGATCAAATC GAAGGAATCT CTCTAGCCTT TAGGCGTATC
GATGATATTT GCAGCCCTGA ATTAATCAAG ACCCTAGCCA AAAACTAA
 
Protein sequence
MANTTKDLFV FANLDGEFVP AGQLQVDEEG SRLIASSFAY GLRYLDRSNA QEVDPVALSL 
RNKREIKGKR LVPPNGLEAF GGIRDAAPDS WGRRVIEARL KVPANSLPES TYLLEAGSDR
VGALDIRSSL DQEECPAHES IHNLSYVLEG AQKIEAGLPV SEALSRILIV GSGLGGMRPK
ASVRDDENIL WMAKFPGNND GALDVPSIEY ATLKLAQLAG LNVAQTQLEQ VGKKKVLMVK
RFDRSWTAFA RPVEIRHHVV SALTLVACHE SESNTKSYMD IADTIRRYCV VQTVKADIEE
LYARMIFNIF VSNDDDHLRN HAFLWNHKLK GWSLSPLYDV MPHAVIASER YQHLGVGPQG
KLATLDNAYG AKERFGLSAQ QASSIIDRVW RVTRQWKTHF ESLGIVADQI EGISLAFRRI
DDICSPELIK TLAKN